Gene
| Gene Model ID | pfu_aug1.0_88481.1_42216 |
|---|---|
| Locus | scaffold88481.1 : 22 ... 1791 : + |
| To GenomeBrowser | scaffold88481.1:22..1791 |
| Genes list of scaffold | scaffold88481.1 |
| Synonym | pfu_aug2.0_4378.1_29288 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-NeuroD |
| Description | Best hit to BAA36519 BETA2 [Homo sapiens] with 3e-50 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein has one Neuro_bHLH domain. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_88481.1_42216.t1 | 2 | 1 | HLH | 70 | 86 | 1.8e-16 | 59.5 | 0.85 | 3200.0 | -2.1 |
| pfu_aug1.0_88481.1_42216.t1 | 2 | 2 | HLH | 92 | 143 | 1.8e-16 | 59.5 | 4.9e-20 | 1.8e-16 | 59.5 |
| pfu_aug1.0_88481.1_42216.t1 | 2 | 1 | Neuro_bHLH | 150 | 224 | 1.8e-18 | 67.4 | 4.9e-22 | 1.8e-18 | 67.4 |
| pfu_aug1.0_88481.1_42216.t1 | 2 | 2 | Neuro_bHLH | 235 | 300 | 1.8e-18 | 67.4 | 0.093 | 350.0 | 2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_88481.1_42216.t1 | gi|189094802|emb|CAQ57533.1| | neurogenic differentiation [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_88481.1_42216.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_88481.1_42216.t1 atgccaataaaaatgcaggaaaattccgaagcggaacaggatttgagttttaccggaagtgaccttgacgatattgacct tgatgatgacatctccgagttgattgaaagtgatgacgaggattccgaagttaactccccggatgagaacaaaaatcaaa agagcagtacgggaaggaagagaaaagacaaacaggaagaacccaaagttccgaaaaagagaggtccaaaaaagaagcga atgaccaaagctagaatagccaaattacgacttcggagggtaaaagcgaacgcaagggaacgaaacagaatgcacgggct aaatgatgctttagatatcttgcgaaaacacgtgccttgttattctaaaacacaaaaactgtccaaaattgaaacactcc gtcttgcccgcaattacatcagtgccttatcggacattctagagtctggagtcaaaccggattcggtcacgtttgcaaaa gctttgtcgaagggactttctcaaaatacaatgaacttagtggctggcggtctacagttaaaccccagaactctactacc ggaatctacatatgccaaacaatatcaattctattacaacaacactttcgaggtgtctaagccaaaccaaaatgtgtctt atcataatgtttattcgttgccttcccctcaagttgcgtacagccattctccaatcaacaacggcgtatctccggtggct agaataccgtactcacattctagtccggtttcctgtggactgccatcgtgtacttccgtatctcaagccaatttcggtaa cgtcagagacacaagtccattgcaggctgcaactgcgtcatcttcaatccaatgcgaggctgtgacgtcatcaaattata tgcaatatgacaacaacatggagaggtacatggacccacgatcgcagcaaaccgtacagttttttccacagcagtcggtg cccgttcctcacgactgtagtccgtacatcttgttagacgacctagcagacttttctccagacactaccatagatactga tatgtctattattagcagcggatcgtcaatttttgatgtcacaggataa |
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Protein
| Protein ID | pfu_aug1.0_88481.1_42216.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_88481.1_42216.t1 MPIKMQENSEAEQDLSFTGSDLDDIDLDDDISELIESDDEDSEVNSPDENKNQKSSTGRKRKDKQEEPKVPKKRGPKKKR MTKARIAKLRLRRVKANARERNRMHGLNDALDILRKHVPCYSKTQKLSKIETLRLARNYISALSDILESGVKPDSVTFAK ALSKGLSQNTMNLVAGGLQLNPRTLLPESTYAKQYQFYYNNTFEVSKPNQNVSYHNVYSLPSPQVAYSHSPINNGVSPVA RIPYSHSSPVSCGLPSCTSVSQANFGNVRDTSPLQAATASSSIQCEAVTSSNYMQYDNNMERYMDPRSQQTVQFFPQQSV PVPHDCSPYILLDDLADFSPDTTIDTDMSIISSGSSIFDVTG |
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