Gene
| Gene Model ID | pfu_aug1.0_8850.1_38830 |
|---|---|
| Locus | scaffold8850.1 : 1 ... 18265 : - |
| To GenomeBrowser | scaffold8850.1:1..18265 |
| Genes list of scaffold | scaffold8850.1 |
| Synonym | pfu_aug2.0_1740.1_01801 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8850.1_38830.t1 | 1 | 1 | Peptidase_C2 | 19 | 248 | 0.0 | 275.3 | 0.0 | 0.0 | 274.7 |
| pfu_aug1.0_8850.1_38830.t1 | 1 | 1 | Calpain_III | 265 | 390 | 4.3e-34 | 117.2 | 2.1e-37 | 1.0e-33 | 116.0 |
| pfu_aug1.0_8850.1_38830.t1 | 1 | 1 | C2 | 422 | 525 | 7.2e-16 | 57.8 | 4.1e-19 | 2.0e-15 | 56.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8850.1_38830.t1 | gi|348537948|ref|XP_003456454.1| | PREDICTED: calpain-5 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8850.1_38830.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8850.1_38830.t1 atgatttttcccagggttccctcgattgttcctgatatggaggaacaggaatggtcgaaggacaacaaatatgccggcat tttccactttcgtttctggcagctaggagagtgggttgatgtagtaatagacgattatttacctgtggataatagcggta atctggtgtatgtacagtctaaagccaaaaatgaattctggtctgcgctgctagagaaggcttatgctaaattatttggt gactacgagtcgttaaagggaggccaagctaaggacgccatggtcgatatgactggaggtgtcggggaaggcttcgagct cgctgatgtctgtaaatcagatgaagataaaaataaactgttcaagattcttaagaaatccaaggagcatcattcattga tcagtgcttctataagggcaacatcacaacatgacatggaggctaaaatgtcctgtggtctggttaaaggtcacgcttac agtgtcacggctgtcaaaaatatccgtctcggaaaaggactcatgtcatacttcaacagggaaaaaatccacatgatgag atgtcgaaatccgtggggcggtactgagtggaagggtgcatggagtgatgggtcagttgaatggcagcaggttagctcca gtgagaaaaaagatatgggactgacatttgatgaagatggagatttttggatgacctatgaggattttctctgttatttc accagtatggatatttgtcacatgctaaacacctccttcatctcacttagcaagtcctaccgagagggtaaggccctcgg ggagtggaagagaggaaagtgtggtggatgtagtaattacccatcattcttacaaaatccacagtataagtttgacgtag atgatgctgaggatgaagtgatgatatcactagagcaatgggacggcagaattaacagggacaagggaagggacaatgaa accatcggcttctgtgttatgaagacggatagaaacagaaagtaccggatgcacgacaccttggagaaagtccaaaccac atcgtacagtaactctcgtaatcaattcgtacgtctcacactgacagagggacgatactgtatcataccaacgacctttg aacctaatgtccaatgtaaatttcttctccgagtttacggcaattctgaccctagtctcaaagagttatacctagatgaa cccccgccaccagattccggtatttttggtattggagcgaagaaacccaaagtagcggccactcaaatcaccgtcatcag agccgagggactggaagtacaggacagggacggctatatgtttgacgttgcaatagaaaattacgtcaaatgttttcatg ctggtctcggtctatatagcattcaggtctacttcgtctctgatccctatgtggtgatattttgtgaaaaaaagaaagag agaacgcggattatcaaaaacaacattaacccagaatggaatgagagaatgacgttttatcatcgcaaaccccatgaaga cattgatgtagagatatggaattacaacaagattcgtgacgagcttcttggtgcttttgtgatccccatgtcagacagga cccgatacagcagtgctcaccatatccagaaatttgatctgttcggaaaaggaaaggaatcaaattgttataataatcaa attgctttcgatgcagcagtagccatgactgtgtggagaaaatctgaaatcgttaacattagatcattatattaa |
|
Protein
| Protein ID | pfu_aug1.0_8850.1_38830.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8850.1_38830.t1 MIFPRVPSIVPDMEEQEWSKDNKYAGIFHFRFWQLGEWVDVVIDDYLPVDNSGNLVYVQSKAKNEFWSALLEKAYAKLFG DYESLKGGQAKDAMVDMTGGVGEGFELADVCKSDEDKNKLFKILKKSKEHHSLISASIRATSQHDMEAKMSCGLVKGHAY SVTAVKNIRLGKGLMSYFNREKIHMMRCRNPWGGTEWKGAWSDGSVEWQQVSSSEKKDMGLTFDEDGDFWMTYEDFLCYF TSMDICHMLNTSFISLSKSYREGKALGEWKRGKCGGCSNYPSFLQNPQYKFDVDDAEDEVMISLEQWDGRINRDKGRDNE TIGFCVMKTDRNRKYRMHDTLEKVQTTSYSNSRNQFVRLTLTEGRYCIIPTTFEPNVQCKFLLRVYGNSDPSLKELYLDE PPPPDSGIFGIGAKKPKVAATQITVIRAEGLEVQDRDGYMFDVAIENYVKCFHAGLGLYSIQVYFVSDPYVVIFCEKKKE RTRIIKNNINPEWNERMTFYHRKPHEDIDVEIWNYNKIRDELLGAFVIPMSDRTRYSSAHHIQKFDLFGKGKESNCYNNQ IAFDAAVAMTVWRKSEIVNIRSLY |
|