Gene
| Gene Model ID | pfu_aug1.0_888.1_07728 |
|---|---|
| Locus | scaffold888.1 : 4502 ... 22495 : - |
| To GenomeBrowser | scaffold888.1:4502..22495 |
| Genes list of scaffold | scaffold888.1 |
| Synonym | pfu_aug2.0_383.1_10704 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_888.1_07728.t1 | 2 | 1 | Neur_chan_LBD | 20 | 182 | 0.0 | 220.9 | 2.4e-38 | 1.8e-34 | 118.7 |
| pfu_aug1.0_888.1_07728.t1 | 2 | 2 | Neur_chan_LBD | 213 | 361 | 0.0 | 220.9 | 8.2e-34 | 6.0e-30 | 104.0 |
| pfu_aug1.0_888.1_07728.t1 | 1 | 1 | Neur_chan_memb | 419 | 547 | 7.5e-10 | 39.1 | 1.0e-13 | 7.5e-10 | 39.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_888.1_07728.t1 | gi|47216180|emb|CAG03168.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 4.00001e-40 |
Transcript
| Transcript ID | pfu_aug1.0_888.1_07728.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_888.1_07728.t1 atgtgcgacatcaaagatataccgacagcaaaaagcaagaagattcagtcagcatacaatttgtacgatgccttactctc gaattactcacgtgaaattcgaccggtagatgatgacattgacattatttatgtgacagcaacatttttcttgagcgcca tcttagatttgaatgagccatccgggcaacttgtttcatctatgtcggtcaacttgatatggaatgacatattgctaagg tggaacccagcagattatgaagggagaactaaaatcgagatttcaaagaagcatatctggactccagatttgatattaat gtcaccaagtcaaatgacaaaaaagctaggtgaagataatgacaaagtcttgatttacagttacggaaacaaaggttttc tatcatttactgttactgatatattttatactatttgtgatattgacgtcacgtattatccatttgatactcaagtttgt gaaataagattttctttgtatgattatgctgatcggatcagatacagatttacagaggacgaggcagctgcgatgaagat tattgtcatcttgcttattccacttgtttttgttgttgcaacttctatgggcggtacacatatacaatctgcttttgatc tttatgacaagttgatgagaaactactctaaggatatcagacctgtgcacaatgagaacaaaaagctcattgtcagtcta actgcaatcctgtactctgtagacagcctggatgaagtttctgggaaatgtgttgttaaccttggattttacatgaaatg gtatgatgtaagtttgacgtggaatttacacgaatatgagaatatatcaagaatggaaatagacgttacacgtatctgga gaccagcgctgcagctctacgtaccgattcaaatgtcgacaagacttgggaaggaagaagataaagctgtagtcaacaat cagggtttgatatcattgtttataaatgacattttccaaactatatgctttgtttatatatatcattttccattcgattc acaaatatgtgacatatggtttggaatgaaggaatatccaaatcttctaggcattgtacctacgtcaacagtgatggaca catcagtgctatttgagaactccaattggatcgtagaaggcaccggtttggttagccttcaattcgaatctcatgataat cttatatgtagaatttttgtgaagagacgaccatcattttacgtcctaacaatgttagctccgacactgacgcttatatt actaaacagtgtagtgttccttttaccagcagagtgtggagaacgtgtgggtttctcagagaccttgctgttatcgactg ctgtgtatatgaccatcatatctgacaaactccaaagctcccccaagccttgtccagtgctagcatacgccctgttggct tacatagctcagtcctcactcatctgtattgaaacaatgatcggtttgaggatatacttcagcgatgacgacaaaccaat tccaccggtattatcttttgctgtacattccctaaaatgtaattttagaaggaaagaaaacagaatagcggagagggatg ataccctgaatatgaatgatcaaaacgagaagaatttcaggaaaagtgatgcagcagatgaggtcacatggaaatcaatt gcaaggatatacgacaaaaatgtatttttcatgaatatattactgacgtttattatagcaattgtgtacttaagtattgt tgtgtaa |
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Protein
| Protein ID | pfu_aug1.0_888.1_07728.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_888.1_07728.t1 MCDIKDIPTAKSKKIQSAYNLYDALLSNYSREIRPVDDDIDIIYVTATFFLSAILDLNEPSGQLVSSMSVNLIWNDILLR WNPADYEGRTKIEISKKHIWTPDLILMSPSQMTKKLGEDNDKVLIYSYGNKGFLSFTVTDIFYTICDIDVTYYPFDTQVC EIRFSLYDYADRIRYRFTEDEAAAMKIIVILLIPLVFVVATSMGGTHIQSAFDLYDKLMRNYSKDIRPVHNENKKLIVSL TAILYSVDSLDEVSGKCVVNLGFYMKWYDVSLTWNLHEYENISRMEIDVTRIWRPALQLYVPIQMSTRLGKEEDKAVVNN QGLISLFINDIFQTICFVYIYHFPFDSQICDIWFGMKEYPNLLGIVPTSTVMDTSVLFENSNWIVEGTGLVSLQFESHDN LICRIFVKRRPSFYVLTMLAPTLTLILLNSVVFLLPAECGERVGFSETLLLSTAVYMTIISDKLQSSPKPCPVLAYALLA YIAQSSLICIETMIGLRIYFSDDDKPIPPVLSFAVHSLKCNFRRKENRIAERDDTLNMNDQNEKNFRKSDAADEVTWKSI ARIYDKNVFFMNILLTFIIAIVYLSIVV |
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