Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_89.1_57965
Locus scaffold89.1 : 57626 ... 75606 : +
To GenomeBrowser scaffold89.1:57626..75606
Genes list of scaffold scaffold89.1
Synonym pfu_aug2.0_618.1_27593

Manual annotation
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
mix 3
egg-Dshape 5
trochophore 8
trochophore 1
>Adult tissues
Dshape 4
Dshape 9

Transcript
Transcript IDpfu_aug1.0_89.1_57965.t1
Definition-
>pfu_aug1.0_89.1_57965.t1
atgcatcggatgctgcatttgacctatattttccgcttgagtgacttggttaagaagtttggggtagctcagagtgactt
ggttaagaagtttggggtagcccagtatctgacaaaacaaagaacgttcagcgaccgcttcatactacgtcttgatattg
tcagatctgcccgccgtcagtccgggagagatccatacacaatgaaagccaccgtaggattattgctctgtgctgtactt
gttgggcttgcccactccatgtacttgccaaaatacagacatcccaaagtcattgtgaaaccgatctacaagccggtgca
catttacaagaaaataccaattattaaaaaagttccaatcattaaaaaagttccagtaataaagagagttcccatcatca
agcatattattaaagaagtcccaatcatcaagaaagttccagtcattaagagggtcgaagtaccagttattaaaaaagta
gaggttatcaaggaggttaaggtccctcatcccgttaaggttgaggttccagttgaggtcccagtcccagtacacgtgga
cagaccagtcaaagtaccagttgaggtcccagtggagaaacacatcgggcatgaaacctttgtccagatttctgacgctg
accatgtcaatttgggtgcctctcccccaggagcaaacgttgttgtcaccgatgctgatcacgtgaacggtttcggtgtt
aatggcgggaatggttttgacaatttcggacttggtcacgatggtggtttcaatggtaatccagtagccatactcggtgt
tcaggaacaggtgggcggagtcgccggtgtagccggagccgctggggccggaccaatcgacaatggtgtgggtcttggta
ttgataacggtgtaggctttgaccacggtgtaggactagataacggtatcggacacggagtgggcgttggtcatcttgac
cagggagtcggagttggagccattgaccaggcagtcggtgtgggtgttaaccagggtgtaggagtcggcattgatcacgg
tgttggtgtaggaattgaccagggcgttggtcacgccggaggatgggatcagggacatggaaatggacaccacaatggcg
gtatcatcgaccagggcgcagtagtagggggagtagccggtaagggatgggatcacggacataatggacataacggtaac
ggatggaacaaaggtcacggaggaaaacatggcaaaattgctggacatgcctaa
Transcript IDpfu_aug1.0_89.1_57965.t2
Definition-
>pfu_aug1.0_89.1_57965.t2
atgcatcggatgctgcatttgacctatattttccgcttgagtgacttggttaagaagtttggggtagctcagagtgactt
ggttaagaagtttggggtagcccagtatctgacaaaacaaagaacgttcagcgaccgcttcatactacgtcttgatattg
tcagatctgcccgccgtcagtccgggagagatccatacacaatgaaagccaccgtaggattattgctctgtgctgtactt
gttgggcttgcccactccatgtacttgccaaaatacagacatcccaaagtcattgtgaaaccgatctacaagccggtgca
catttacaagaaaataccaattattaaaaaagttccaatcattaaaaaagttccagtaataaagagagttcccatcatca
agcatattattaaagaagtcccaatcatcaagaaagttccagtcattaagagggtcgaagtaccagttattaaaaaagta
gaggttatcaaggaggttaaggtccctcatcccgttaaggttgaggttccagttgaggtcccagtcccagtacacgtgga
cagaccagtcaaagtaccagttgaggtcccagtggagaaacacatcgggcatgaaacctttgtccagatttctgacgctg
accatgtcaatttgggtgcctctcccccaggagcaaacgttgttgtcaccgatgctgatcacgtgaacggtttcggtgtt
aatggcgggaatggttttgacaatttcggacttggtcacgatggtggtttcaatggtaatccagtagccatactcggtgt
tcaggaacaggtgggcggagtcgccggtgtagccggagccgctggggcagccggaccaatcgacaatggtgtgggtcttg
gtattgataacggtgtaggctttgaccacggtgtaggactagataacggtatcggacacggagtgggcgttggtcatctt
gaccagggagtcggagttggagccattgaccaggcagtcggtgtgggtgttaaccagggtgtaggagtcggcattgatca
cggtgttggtgtaggaattgaccagggcgttggtcacgccggaggatgggatcagggacatggaaatggacaccacaatg
gcggtatcatcgaccagggcgcagtagtagggggagtagccggtaagggatgggatcacggacataatggacataacggt
aacggatggaacaaaggtcacggaggaaaacatggcaaaattgctggacatgcctaa
Transcript IDpfu_aug1.0_89.1_57965.t3
Definition-
>pfu_aug1.0_89.1_57965.t3
atgcatcggatgctgcatttgacctatattttccgcttgagtgacttggttaagaagtttggggtagctcagagtgactt
ggttaagaagtttggggtagcccagtatctgacaaaacaaagaacgttcagcgaccgcttcatactacgtcttgatattg
tcagatctgcccgccgtcagtccgggagagatccatacacaatgaaagccaccgtaggattattgctctgtgctgtactt
gttgggcttgcccactccatgtacttgccaaaatacagacatcccaaagtcattgtgaaaccgatctacaagccggtgca
catttacaagaaaataccaattattaaaaaagttccaatcattaaaaaagttccagtaataaagagagttcccatcatca
agcatattattaaagaagtcccaatcatcaagaaagttccagtcattaagagggtcgaagtaccagttattaaaaaagta
gaggttatcaaggaggttaaggtccctcatcccgttaaggttgaggttccagttgaggtcccagtcccagtacacgtgga
cagaccagtcaaagtaccagttgaggtcccagtggagaaacacatcgggcatgttgataatggcgcacatgttgacgcgg
gttttgtcgatgtagcaccggcagctggtgttggtggccatggtggggctggagcttttgaccacggtattggagtaatg
gacgccggacttggcgtcggcggacccggtcttgacgccggtatattaggcggaggaggagttggtgtcggcggtgtcga
cggcgtgggagatctcggtatcggaggaataggagggggtatcgggggaggatcaggaaatggaaaaggcgatatcaaca
tcggcattgggatgggtttcggagacggcgtgggcaaaggttctgccggggacgctcacgctgtggaaacctttgtccag
atttctgacgctgaccatgtcaatttgggtgcctctcccccaggagcaaacgttgttgtcaccgatgctgatcacgtgaa
cggtttcggtgttaatggcgggaatggttttgacaatttcggacttggtcacgatggtggtttcaatggtaatccagtag
ccatactcggtgttcaggaacaggtgggcggagtcgccggtgtagccggagccgctggggcagccggaccaatcgacaat
ggtgtgggtcttggtattgataacggtgtaggctttgaccacggtgtaggactagataacggtatcggacacggagtggg
cgttggtcatcttgaccagggagtcggagttggagccattgaccaggcagtcggtgtgggtgttaaccagggtgtaggag
tcggcattgatcacggtgttggtgtaggaattgaccagggcgttggtcacgccggaggatgggatcagggacatggaaat
ggacaccacaatggcggtatcatcgaccagggcgcagtagtagggggagtagccggtaagggatgggatcacggacataa
tggacataacggtaacggatggaacaaaggtcacggaggaaaacatggcaaaattgctggacatgcctaa

Protein
Protein IDpfu_aug1.0_89.1_57965.t1
Definition-
>pfu_aug1.0_89.1_57965.t1
MHRMLHLTYIFRLSDLVKKFGVAQSDLVKKFGVAQYLTKQRTFSDRFILRLDIVRSARRQSGRDPYTMKATVGLLLCAVL
VGLAHSMYLPKYRHPKVIVKPIYKPVHIYKKIPIIKKVPIIKKVPVIKRVPIIKHIIKEVPIIKKVPVIKRVEVPVIKKV
EVIKEVKVPHPVKVEVPVEVPVPVHVDRPVKVPVEVPVEKHIGHETFVQISDADHVNLGASPPGANVVVTDADHVNGFGV
NGGNGFDNFGLGHDGGFNGNPVAILGVQEQVGGVAGVAGAAGAGPIDNGVGLGIDNGVGFDHGVGLDNGIGHGVGVGHLD
QGVGVGAIDQAVGVGVNQGVGVGIDHGVGVGIDQGVGHAGGWDQGHGNGHHNGGIIDQGAVVGGVAGKGWDHGHNGHNGN
GWNKGHGGKHGKIAGHA
Protein IDpfu_aug1.0_89.1_57965.t2
Definition-
>pfu_aug1.0_89.1_57965.t2
MHRMLHLTYIFRLSDLVKKFGVAQSDLVKKFGVAQYLTKQRTFSDRFILRLDIVRSARRQSGRDPYTMKATVGLLLCAVL
VGLAHSMYLPKYRHPKVIVKPIYKPVHIYKKIPIIKKVPIIKKVPVIKRVPIIKHIIKEVPIIKKVPVIKRVEVPVIKKV
EVIKEVKVPHPVKVEVPVEVPVPVHVDRPVKVPVEVPVEKHIGHETFVQISDADHVNLGASPPGANVVVTDADHVNGFGV
NGGNGFDNFGLGHDGGFNGNPVAILGVQEQVGGVAGVAGAAGAAGPIDNGVGLGIDNGVGFDHGVGLDNGIGHGVGVGHL
DQGVGVGAIDQAVGVGVNQGVGVGIDHGVGVGIDQGVGHAGGWDQGHGNGHHNGGIIDQGAVVGGVAGKGWDHGHNGHNG
NGWNKGHGGKHGKIAGHA
Protein IDpfu_aug1.0_89.1_57965.t3
Definition-
>pfu_aug1.0_89.1_57965.t3
MHRMLHLTYIFRLSDLVKKFGVAQSDLVKKFGVAQYLTKQRTFSDRFILRLDIVRSARRQSGRDPYTMKATVGLLLCAVL
VGLAHSMYLPKYRHPKVIVKPIYKPVHIYKKIPIIKKVPIIKKVPVIKRVPIIKHIIKEVPIIKKVPVIKRVEVPVIKKV
EVIKEVKVPHPVKVEVPVEVPVPVHVDRPVKVPVEVPVEKHIGHVDNGAHVDAGFVDVAPAAGVGGHGGAGAFDHGIGVM
DAGLGVGGPGLDAGILGGGGVGVGGVDGVGDLGIGGIGGGIGGGSGNGKGDINIGIGMGFGDGVGKGSAGDAHAVETFVQ
ISDADHVNLGASPPGANVVVTDADHVNGFGVNGGNGFDNFGLGHDGGFNGNPVAILGVQEQVGGVAGVAGAAGAAGPIDN
GVGLGIDNGVGFDHGVGLDNGIGHGVGVGHLDQGVGVGAIDQAVGVGVNQGVGVGIDHGVGVGIDQGVGHAGGWDQGHGN
GHHNGGIIDQGAVVGGVAGKGWDHGHNGHNGNGWNKGHGGKHGKIAGHA

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495