Gene
| Gene Model ID | pfu_aug1.0_8905.1_67944 |
|---|---|
| Locus | scaffold8905.1 : 3576 ... 23099 : + |
| To GenomeBrowser | scaffold8905.1:3576..23099 |
| Genes list of scaffold | scaffold8905.1 |
| Synonym | pfu_aug2.0_549.1_30899 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8905.1_67944.t1 | 1 | 1 | Acyl-CoA_dh_N | 84 | 193 | 1.3e-20 | 74.0 | 6.2e-24 | 3.0e-20 | 72.8 |
| pfu_aug1.0_8905.1_67944.t1 | 1 | 1 | Acyl-CoA_dh_M | 198 | 250 | 1.4e-20 | 72.5 | 4.7e-24 | 2.3e-20 | 71.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8905.1_67944.t1 | gi|291233917|ref|XP_002736889.1| | PREDICTED: very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8905.1_67944.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8905.1_67944.t1 atgctgcgagttccccttcttttacgaaatactacatcagtaagagctgttagtccattcttaagtcaacatcgctatgc tacagctgaagcacaagcccaagagcctggtcaaaatgtcaaagccagtaaagccaaaagccaaccagaaccagtcaagg agtcagtttcatttgccaagaacttattcagaggcacaatcaaggcagaccaagtattccctttccctgaggttctagat gatgaacagacagaaatgcttcaaatgttggtggatccttgtgcaaaattctttgaggagcagaatgatgccctaaagaa tgactccctagagaaggtagaggaccatgtaatggagggactgaaggagatgggggcattcggacttcaggtgccacagg aacatggaggacttggtttgaataacactcagtatgccagactagtggagatcgtaggatcacatgatctaggagttggt atcacgcttggcgcacatcagtccattggattcaaaggcatcttgttatctggaaatcccgagcagaaagccaagtattt gccagatcttgcctgcggcaaaaaaatggcagcattttgtctcactgaaccagcaagtggctctgatgctagttctataa agaccagagctgtaccatcagctgatggtaaacattacactttaaatggaagcaagatttggatcagtaatggagggcta gcagaagtcttcacagtttttgctaagacaccagtaaagaatgaaaccaccggagaaaccaaggataagattactgcttt catcgtagaacgttcctttggtggagtgtccaatggtccaccagagaagaagatgggaattaaggcttctaacacagcgg aagtttattttgaggactgtaaagttccagctgaaaatgttctcggaggtataggaaatggtttcaaagtggctatgcac attttaaacaatggtagatttgggatggcagcagctctgtctggaactatgtcatattgtataagaaaagcatatgcggg aaaatatctacaagaagtacagaaagcgatgaagaaccctgtaggcaacatgagtgtactgatggatatgaccagtaaac gggcaaagagataa |
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Protein
| Protein ID | pfu_aug1.0_8905.1_67944.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8905.1_67944.t1 MLRVPLLLRNTTSVRAVSPFLSQHRYATAEAQAQEPGQNVKASKAKSQPEPVKESVSFAKNLFRGTIKADQVFPFPEVLD DEQTEMLQMLVDPCAKFFEEQNDALKNDSLEKVEDHVMEGLKEMGAFGLQVPQEHGGLGLNNTQYARLVEIVGSHDLGVG ITLGAHQSIGFKGILLSGNPEQKAKYLPDLACGKKMAAFCLTEPASGSDASSIKTRAVPSADGKHYTLNGSKIWISNGGL AEVFTVFAKTPVKNETTGETKDKITAFIVERSFGGVSNGPPEKKMGIKASNTAEVYFEDCKVPAENVLGGIGNGFKVAMH ILNNGRFGMAAALSGTMSYCIRKAYAGKYLQEVQKAMKNPVGNMSVLMDMTSKRAKR |
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