Gene
| Gene Model ID | pfu_aug1.0_8933.1_60524 |
|---|---|
| Locus | scaffold8933.1 : 12306 ... 22350 : + |
| To GenomeBrowser | scaffold8933.1:12306..22350 |
| Genes list of scaffold | scaffold8933.1 |
| Synonym | pfu_aug2.0_970.1_01283 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8933.1_60524.t1 | 2 | 1 | Cyclin_N | 18 | 144 | 6.1e-25 | 87.2 | 9.2e-29 | 1.4e-24 | 86.1 |
| pfu_aug1.0_8933.1_60524.t1 | 2 | 2 | Cyclin_N | 212 | 252 | 6.1e-25 | 87.2 | 0.066 | 980.0 | -0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8933.1_60524.t1 | gi|260786520|ref|XP_002588305.1| | hypothetical protein BRAFLDRAFT_265991 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 2 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8933.1_60524.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8933.1_60524.t1 atggcacatactaacgggttagatgctcagcatctgatgaagatgctcggggaactccttcacaaggagcaggaaaagtg gaatccaaaagttttcaaagtcactggtcacacagaaatggaggttcttggacaacaccgtgacagaatcgtgaagtgga tactgtctctgaataaagaattccgatttttaccagaaactcttggcctgtgtattagtctgttggacagattcctgaat cttgtaaaggtccgccccaagtatctaccctgtgtcgccattagctgcctctacatcgcagccaaaaccctggaggagga tgaagtcatccccagcactgtggatttagtgaagacgatcaactgtgtgtgtactgtggccgaggtgctaagaatggaag ccattgtccttaataaactatcctgggacattaaaagggtcactcctgttgattttctacatgtaattcacagtctgtta atgtactaccacccccagttgttggatgttctttgtaacgtcacaccctcacagttactgacactccttaccaggaaaac gctcaactgtctctcgttacatcaactcagcagttatcgtccctcggtcatcactctagcagtcgtcagtttagagttgg aacagattacgacagcttggctctccatctgtgtcatggtgcagaagatgcttgatatcaacatggaatcttttgttaaa tgtcgggaaatagttggacagttccttagccagcaaggcttgttacaatcaggttacaagtttcgatccatcagacgctc caaatcaatgaagagaaaagctatagatgacgatgactattgtgacgagatctacgagggaattaaacgactgtacaatg aggatgtttctatggagtttaatgttgacatgaggatgtcatgtggcaaagaagtcaatcagcaccaagatattgatccc agaaataacttttgcattccagctgtaagcgctaattaa |
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Protein
| Protein ID | pfu_aug1.0_8933.1_60524.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8933.1_60524.t1 MAHTNGLDAQHLMKMLGELLHKEQEKWNPKVFKVTGHTEMEVLGQHRDRIVKWILSLNKEFRFLPETLGLCISLLDRFLN LVKVRPKYLPCVAISCLYIAAKTLEEDEVIPSTVDLVKTINCVCTVAEVLRMEAIVLNKLSWDIKRVTPVDFLHVIHSLL MYYHPQLLDVLCNVTPSQLLTLLTRKTLNCLSLHQLSSYRPSVITLAVVSLELEQITTAWLSICVMVQKMLDINMESFVK CREIVGQFLSQQGLLQSGYKFRSIRRSKSMKRKAIDDDDYCDEIYEGIKRLYNEDVSMEFNVDMRMSCGKEVNQHQDIDP RNNFCIPAVSAN |
|