Gene
| Gene Model ID | pfu_aug1.0_9.1_43392 |
|---|---|
| Locus | scaffold9.1 : 29994 ... 43805 : - |
| To GenomeBrowser | scaffold9.1:29994..43805 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug2.0_1678.1_28459 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9.1_43392.t1 | 2 | 1 | RhoGEF | 1 | 87 | 7.4e-18 | 65.0 | 1.5e-21 | 7.4e-18 | 65.0 |
| pfu_aug1.0_9.1_43392.t1 | 1 | 1 | PH_10 | 103 | 209 | 5.2e-06 | 26.6 | 7.8e-08 | 0.00039 | 20.5 |
| pfu_aug1.0_9.1_43392.t1 | 2 | 2 | RhoGEF | 204 | 257 | 7.4e-18 | 65.0 | 0.13 | 640.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9.1_43392.t1 | gi|260807629|ref|XP_002598611.1| | hypothetical protein BRAFLDRAFT_67006 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_9.1_43392.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9.1_43392.t1 atgtatgtaaagtattgcgagaacaagccaaaatccgagtacattgtcgcagagaatttagattattttgaggagctcag acaaaaattaggtcataggttaaacctacctgacctacttattaaacctgtacagcgtattacaaaataccaacttctgc tcaaggatatactcaagtacacagatagagctggtgagaatacgaaggctctggagaaagcgttacatgtgatgtgtgtg gtaccaaaagccgctaatgacatgatgcaagtaggcaggcttcagggattcgatggtaaaataactgctcaaggaaatct gctgttacacgacaccctgctggtagcagaggtgatgcagaataaaggcgatcaaaaattcaaggagagacgagtatttt tgttcgatcagataataatcttcagtgaaatgacgcagcggaggggagacagctttacaaatgcaaattacgtctataaa aatagtctcaagacaaacaagatgataatgaaatgtcccctgccgaacgagccgctgaaatttatgttgatcgataaatc tccgagctccgatacacgattcatcatccaagctcagtcagaggaaatcctggagacatggacaacaaagattaagtcca tactagatatgcagaatgattttattgattataaactcggagactcatattccgagagtgcttcagacgtaaacattagt aaatcctcgtcaaccgaagcatgttcggattttcatagacaacactcaaattcttctattgggagtgtgtccccgaatat aaaaccgaagaaaaatattctggagggtctcaagtacaaaaaatcaaaaagtgacagtgcgactgctcctaatgatcaaa gtgcaagtatgaactcgagtttaggaaatagtgaacaatttgagaatttctcaaggacttctgatcggggagaattagat tctagtcagtcagaggaaacaggggctgatcaatcatcgtacctggaatattattcaattcggtag |
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Protein
| Protein ID | pfu_aug1.0_9.1_43392.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9.1_43392.t1 MYVKYCENKPKSEYIVAENLDYFEELRQKLGHRLNLPDLLIKPVQRITKYQLLLKDILKYTDRAGENTKALEKALHVMCV VPKAANDMMQVGRLQGFDGKITAQGNLLLHDTLLVAEVMQNKGDQKFKERRVFLFDQIIIFSEMTQRRGDSFTNANYVYK NSLKTNKMIMKCPLPNEPLKFMLIDKSPSSDTRFIIQAQSEEILETWTTKIKSILDMQNDFIDYKLGDSYSESASDVNIS KSSSTEACSDFHRQHSNSSIGSVSPNIKPKKNILEGLKYKKSKSDSATAPNDQSASMNSSLGNSEQFENFSRTSDRGELD SSQSEETGADQSSYLEYYSIR |
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