Gene
| Gene Model ID | pfu_aug1.0_9.1_43393 |
|---|---|
| Locus | scaffold9.1 : 44738 ... 114025 : - |
| To GenomeBrowser | scaffold9.1:44738..114025 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug2.0_151.1_03714 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9.1_43393.t1 | 4 | 1 | Spectrin | 3 | 45 | 4.3e-09 | 36.6 | 9.1e-05 | 0.23 | 11.7 |
| pfu_aug1.0_9.1_43393.t1 | 4 | 2 | Spectrin | 174 | 278 | 4.3e-09 | 36.6 | 1.1e-11 | 2.7e-08 | 34.0 |
| pfu_aug1.0_9.1_43393.t1 | 1 | 1 | RhoGEF | 327 | 497 | 8.5e-36 | 123.5 | 3.4e-39 | 8.5e-36 | 123.5 |
| pfu_aug1.0_9.1_43393.t1 | 4 | 3 | Spectrin | 605 | 631 | 4.3e-09 | 36.6 | 0.27 | 670.0 | 0.6 |
| pfu_aug1.0_9.1_43393.t1 | 4 | 4 | Spectrin | 954 | 974 | 4.3e-09 | 36.6 | 0.74 | 1800.0 | -0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9.1_43393.t1 | gi|242007895|ref|XP_002424753.1| | Huntingtin-associated protein-interacting protein, putative [Pediculus humanus corporis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9.1_43393.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9.1_43393.t1 atggcacaagtaactaacagagctgaatccatgatacagagtagccactataactctgacctggtgagggcaatcgcaga aaacgtaacgttcgcatggcaacagctgatgtatcatacggaagaacggcacaaactcgttatggcttccatgaactggt acaagacggcagaacaggtatggtcagtgctggagagtttggacagagattataaacgtgaggaagactggtgtagcaca gaacgtgtcgtaccgagcgagaaggcaaactacctactacagcttataaacaaacataacgaacagaaggaggctttcct caaggcttgcactcttgctagaagaacagctgaaacgttcctgaagtatgtcagtaggaatctccatacgtttggttcac agctcaagttcagaagtcccgaaaagcacgtcaaagcaacccttgaccaattactgcagcaggagaacattgttatagaa tattggacggtcaaaaagaagaagctggaacaatgtcatcaatatgtattatttgaacagagtgctaagcaggctataga ttggatcagagattacggtgagaaatatctacagacccataaagatgtcggttccaacgcacaagaaacagaaaacttgt taaaggaatactatgaattcaggagcagagccaaggaaacaaaagaaagtgtcaaactcctcctgtcattggccgatggc ttcgttgctaagggtaacatacatgctagtagtattatgcagtggtgtggagccgtggacaaacgctataaagatttttc ctcacggatggaaaagtatcgtcacaagctagagtctacactaggtgtcaaaggagaggagcctaaagaagaggagaagc agcgtcacagtgactcgtccatcgaggagaaagtcctccatcaaactcctaaagaactcacggaggagaaacgcagatct gctaggaggagggaatttatcatggcagaattattacagacagagagaacatatgttaaggacttggatgtgtgtttaaa gtgttatttaaacggcatgaaagatacgaggaacgatgtgcctcaaggaattgtgggaaaacataaagttatttttagca acattgaggaaatatatgaattccataacagtgttttcttgaaggagctagagaaatatgagactatacctgaagatgtg ggccattgctttgttacatgggcacagaagttttctatatatgtaacatactgtaaaaataaacctgactcaaatcaact gctagtggagcatgctggaggattctttgaggaactacaaggaagacataagttgaacgaaccgttagcttcctacctaa tcaaaccggtacagcgtatcaccaagtatcaactactgctgaaagatctgttatcctgctgcgagggtcacataggggaa attaaggatggtttagaggtaatgatgagcgtaccgaagaaggctaacgatgccatgcacctctcgctgctcgaaggtct cgaggagaaagttgaggccctcggtgatgttttcctccaggaccagtttaccgtatgggatccaaaacagctgattaaaa aggggcgtgatcggcatctcttcctgtttgatatgtgtctcattttttcgaaggaggtgaaagatagtaacggaaaagca aagtatcagtacaagttcagacttatgatttctgacgtaaacatcacagaacatatagagggagatgagacaaagtttgc tctatggacaggaagggctcctatctctgactatagaattattctgaagtccaaagacctagagaccaaacagaactggg tgaagaagttacgagaattgatgcaggagagaatgcagtatatgcatgaggcactgaaggacaaacaacctcagctgttc aaacctccacctaaatctttccatccgaccagacaagctccaatgggtctgattaaaagagagccaggtggtgaccttga ctctgatgaccttcccattgagagaagacgagggtccttcacctctatgatctccttggcaaccacggtaactaccgaca gcagtagtagcggaggagaaaaggacaggggtgacgtcacagtggtcatagaggattactctgcggcaaacaactcagaa ctgactgtcatcaaaggccagcaggtggagttactagatacagcgccccctggtgagcagaattggtgtctggttcgtat gatcaatgcagaggacggagaacctacccaggggctcgtacctatatcctcccttaaaatgatacctgccctacagagag cgaccaatagaaacagtatggacctagaagagacaatgggtttaccaaaggaacgcagcgcttcaccggtatccaaaagg aaaactagtttcaagaaatggttgaaagtaggtcaaggtaaaccagtcacagagaaaatggagaggaagtccgcctgtac catcatggagccacccaaaacagacctgcccaaaaaggtgttaataggtcccctagggtcagtcagaaaaaaggagccaa gtgaccagccggtgaagtcgcccgtggaccaagccgacgacgaggcccctgacatcaccatgcccccacccatggagata cagactcattttaccacaccccctgatggatcccccgaactgccgtcttcactaggactaaagacgccgactacagaccc tgttacgggaatagatctagagtctgaaatcgacaaactcgtgcagaaacgctcagatatgaacagcgacaacagatctg acgggggccaagcgtcatctgaatctgggggagaaaacaacgaggccgaagcagacgacggagagaaagaaaaagaaaaa tatatacagaaaagaagatgtgatttggaatcaagatttgactatagaaaaattgatgcagagagcacctag |
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Protein
| Protein ID | pfu_aug1.0_9.1_43393.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9.1_43393.t1 MAQVTNRAESMIQSSHYNSDLVRAIAENVTFAWQQLMYHTEERHKLVMASMNWYKTAEQVWSVLESLDRDYKREEDWCST ERVVPSEKANYLLQLINKHNEQKEAFLKACTLARRTAETFLKYVSRNLHTFGSQLKFRSPEKHVKATLDQLLQQENIVIE YWTVKKKKLEQCHQYVLFEQSAKQAIDWIRDYGEKYLQTHKDVGSNAQETENLLKEYYEFRSRAKETKESVKLLLSLADG FVAKGNIHASSIMQWCGAVDKRYKDFSSRMEKYRHKLESTLGVKGEEPKEEEKQRHSDSSIEEKVLHQTPKELTEEKRRS ARRREFIMAELLQTERTYVKDLDVCLKCYLNGMKDTRNDVPQGIVGKHKVIFSNIEEIYEFHNSVFLKELEKYETIPEDV GHCFVTWAQKFSIYVTYCKNKPDSNQLLVEHAGGFFEELQGRHKLNEPLASYLIKPVQRITKYQLLLKDLLSCCEGHIGE IKDGLEVMMSVPKKANDAMHLSLLEGLEEKVEALGDVFLQDQFTVWDPKQLIKKGRDRHLFLFDMCLIFSKEVKDSNGKA KYQYKFRLMISDVNITEHIEGDETKFALWTGRAPISDYRIILKSKDLETKQNWVKKLRELMQERMQYMHEALKDKQPQLF KPPPKSFHPTRQAPMGLIKREPGGDLDSDDLPIERRRGSFTSMISLATTVTTDSSSSGGEKDRGDVTVVIEDYSAANNSE LTVIKGQQVELLDTAPPGEQNWCLVRMINAEDGEPTQGLVPISSLKMIPALQRATNRNSMDLEETMGLPKERSASPVSKR KTSFKKWLKVGQGKPVTEKMERKSACTIMEPPKTDLPKKVLIGPLGSVRKKEPSDQPVKSPVDQADDEAPDITMPPPMEI QTHFTTPPDGSPELPSSLGLKTPTTDPVTGIDLESEIDKLVQKRSDMNSDNRSDGGQASSESGGENNEAEADDGEKEKEK YIQKRRCDLESRFDYRKIDAEST |
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