Gene
| Gene Model ID | pfu_aug1.0_9.1_43410 |
|---|---|
| Locus | scaffold9.1 : 387618 ... 430145 : - |
| To GenomeBrowser | scaffold9.1:387618..430145 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug2.0_167.1_23602 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | PfCHS1 like protein |
| Description | chitin synthase (PfCHS1) related protein, best hit to BLAST BAF73720.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9.1_43410.t1 | 2 | 1 | Myosin_head | 10 | 223 | 0.0 | 456.5 | 0.0 | 0.0 | 216.3 |
| pfu_aug1.0_9.1_43410.t1 | 2 | 2 | Myosin_head | 263 | 631 | 0.0 | 456.5 | 0.0 | 0.0 | 246.5 |
| pfu_aug1.0_9.1_43410.t1 | 1 | 1 | Glyco_tranf_2_3 | 1241 | 1399 | 9.7e-13 | 48.4 | 1.1e-15 | 1.9e-12 | 47.5 |
| pfu_aug1.0_9.1_43410.t1 | 2 | 1 | Chitin_synth_2 | 1247 | 1411 | 5.4e-27 | 94.3 | 2.9e-29 | 4.7e-26 | 91.2 |
| pfu_aug1.0_9.1_43410.t1 | 1 | 1 | Glyco_trans_2_3 | 1249 | 1470 | 3.2e-16 | 59.6 | 4.4e-19 | 7.3e-16 | 58.4 |
| pfu_aug1.0_9.1_43410.t1 | 2 | 2 | Chitin_synth_2 | 1497 | 1586 | 5.4e-27 | 94.3 | 0.047 | 78.0 | 1.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9.1_43410.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9.1_43410.t1 atgtgtgaaaatttgactttactggacgtatttgacattgattatgtcacgcagattttggaaatacgtcacaagaatca aaatccatatacaaatgtcggggacatacttatatcaatcaatccatgcagtgatatccaaatttacagagcagagcaac atgaaaaatacagtcacgcaatcaagcagtctgcaaatccacctcatgttttttggacggcggaagtggcaaaaagaaac atgcgcagctcacaggaagaacaatgcattgtggttacaggagaatctggtgcggggaaaacggaaaatacaaagcatgt cctaaaccatctgtttagatcaacgaaatgcaaacatcctgatctagtctctaagattgaacaggcaaatcctcttttag aactgtttgggaatgccgtgacagagttgaaccagaattccagtagatttggaaagttagttgagcttcattatgatggc aacggggagattgttggagggaaaatagatacgttcctactggaaagatcacgtgttgttcaccatggtgacagagaaac aaattttcatgtgttttacggtttctttgctgggttccagtcaagttcactaaaagaccactatcttctagaaaatccaa gctcttataggatcctgagagatactgaagattgtaacgattcaacatccgggatattcagcgtcgaggagaaagagaaa tacaagtcacaatatctgacagcagagcacattctaacagaacatttcaaatgttcagtggaggacacaacaatggaaga ttttgtcgagtcactttgctccactgtaacctacagtaagaatgagaagatagttcgagggaagtcaaaatgtcaggcag aagaggaacgagatgctgtgataaaacacttgtacaaacttctgtttgaaacagtggtgagactggtaaacgagagtatc aaaccagcaacatctgcggaaaccactctcggaatactggatgttagtggatttgaaaagctggaacagaagcagaacaa tttcgaacaacttcttattaatataacaaacgaaatattgaatcaatacttccgaaaagcagttttcacggctgaaaatg acgatctattcaaagaaggggttacaatgagcacatcttacactgaccatgattcgagcaatgaagttttgcacttatgt ttgggcaccaaagagcgtacaggaattttgaggcttatagacgaagaactccagtcctcagaaccgacagattcttccct tgtgagaaagtatgactatcatttctcagcttgcaagtcctaccaaacagtaaaagacggaaaatgttttgcagtcaacc actatgcagatttggtgaactacaatgcagaggggtttatgtctaagaacagatcaaggttatcacagggaatgctggaa tgtcttcagaagtcgaaaaatcgttttgtgaactcagggaatccggcggataaaggaaagaaagctccagtacggtgtgg aaagttgaatgacagttccgcaaagcaatacagggaatctctacagcatttgacggactatttgtcgaaaacgcgtcctt tgtttatcaggtgtatcaagccaaatcgtcagtgtgaagacagtcattttgacgccgactacgtgaaacaacagttactg tacagtggaataagagaacttatcaagataaggagggatggcttcccttacagattcacattcgagcaattctgcaaacg gttttctttgctgacgactgaatgcaacatcgaaagatcggcatccgagaaatgtcgggatatactccgtgtactcagaa ctagtggcaacgatagtgaccctgcccttattggtaaaactaagattctgttgaaagcctgcgcaatggaagaattgaca gaacaggttgaagttaagaggactgaagaagaggaaagagtcaggaaaatagaggcagaaaaaagagaaaaaaggaaaga ttcactcagaaaaagaaagggcgtctcctttgactccactttaaaaacagaaaatgagaaagacaaaaaagaagatgacc aggcctcattgccttcttctcctccaccttcctatacaagtgagagagaaactaaagaagaaaatacgaaggagacagca aacccgaacaatcttcataagcatccttgcactcagcagaaacttcagatatcagcgttgccggactatcgagcatttaa tgtttcaacagagaaatttatgaatatcatctcgaatgatacgtcataccgtgctgctcggatgacctgcacacaaaaca ttgatgttgtatcactaaataacagtgcaatttcaaaccattctctgatgacaagtgatatagtgaatagaacattaaga gggaatgaaacggatatgataaatggtacgtcaaactccaacacacagcctccgtccgaatttttgagagaagaagggag acagcttacattttctcactcgatgctccttagcagagataaattccaaagttgtgacatacatattggagattttaacg gcaacacgcatcagatgaaagattttgacgtcttcaatcatgcatgtaattcgtgtttaaatgaaaaatgcttagggaat tttctgaacgaggatcgggaaagttttaaacagtattgcaactaccatactggaagctttatacagaactatggactgat gatgattttagcgatagctccaattatcttaggatatgctggcaccgtggcttgtagactgcatatgcagaaattttcat tcaatcttgcgctgcttctggcaccgatcggatcttatgtattcctatactttactggtctctgcaaagacgagaatttg cttgaaggtgaaataaagtgttctgctgtagaaagcaatgacttatacatcacgaactcaataattgttgtgctaacttt ctcgattatgctgatatgttggcacctatggtggccttcttgtgaaagaatggcaaaattagaacgattgttctctttac caatcgtggatggcttacttgttccactaagcttactcttccgtcgtcgactagatcatttagatgagaaggaccataaa aaggaacaacaaaacgatacagaaaacaaaccaagaagaaagaagacacgtcctgtagtctatgtttgtgcaactatgtg gcatgaaacaaaacaggaaatgacgcaactgctaaaatctctattcagacttgacttctttcatagccaaaatcaaatgg cagaaaaaaatttcaacgttgaattggaatactttgaggtgaaaatccatgtcatatttgatgatgcattcatcactgat gcaaaaacaaggaacagaaaaccaaacaaatgggttgaacaacttgtaaattgcatcgaagaagcagcagagtcggttgc caaaggtaaaattcattgggacagtcaacccaggaaggttcttacgccatatggtggacgcttggtctggactatgcccg gaggaacaaagatgatctttcatctaaaggacaaagacaaaattagacatagaaaacgttggtctcagataatgtacatg tattacctacttggataccgattcatgggatccattggtgatgatggctattctgaatgtgcccagaaaagaaaattcaa gaaaaatgcatcaatattaaatcactttaacagaccaacatataaaaaggcagccaacacatttattcttacattggatg gagatgtggatttcaaacccgaggcggtcaacctgttactggacagaatgaagaaaaacatcaaagtaggggctgtttgt ggtagaatccatcctataggatctggtccaatggtctggtaccagaaatttgagtatgcagttggacactggcttcagaa ggctgctgaacacgtgtttggatgcgtattatgctgtcccggatgttttagtctgtttcgcgcgagcgctttgatggatg acaacgtaatgaagcgttatacgaccccaccggaagaagccaaacattacatacaattcgaacagggggaggaccgctgg ctatgtacattaatgcttcagcaaggatataaaatcgactattgcgcaggcgccgatgccctgacatacgcccctgaaac gttcaatgacttcttcgtacagcggagacgttgggctccatccactatggccaatatcatagatctgatttcgtcctggt caacaactgtgaaggaaaatgataatatcagttccctgtttatgttttatcagctggtcctattaatgtcgagtctatta ggccctggcatggtaacacttatgattgcaggctcgtacagcgcagtgttcagcttcaatgcatggtatggcttacttct tgctgtgttgccggttgctacctacgtcttcgtttgcataagaacaaagaacgacacacagattaaagtagcgggtcttt tatcatcaatgtacgcgattgtcatggtaattgttactgttggaatgctgatcaatctattatctgagcctatttatagt ccaaatataatatttgtcgagataatagctgcaattttcgtatcagccggaatgttacatccgaaggaaataggaaattt attctatggtacactttattacctaacagtgccatctacatttgttttcctcacggtgtactatatctgcaacattaata acgtttcatggggaacgagagaaacgtcaaaggttgccgattcattggtgtatgaaaacgcttatcatagtcagccggaa aatcaaggacttgccatgaagattgccaaaaaacttggcctactgcacctaaagaaagagctcaatacttttattaaaat acttaacagtgaccaggatgatccaaaagaaaataaatcaagcaaaggtcagctggaaaatcaagcaaagacatcagtga ttcctatgccttttgacaaagacaagccaatcaatgaaaaagcatggtgctcagaaaaatatttaggccaaaaggtagga gagaaatgcgagcaagacgaagcggaattttggaatgatataattgagaaatacctgacacctctgatcgaagataaaga gaagaaagaggagatcgaaaaagacttacttgacctgcgcaataatgttgtttttgggttctttctactgaattctttat ttgtaattttcgtatttcagttgcaaataaacaaagataagctgaaaaacttctttctactcggtgaatacgagccagtg tctcttgccttccttgctgtctttgctgtcgtaatactaattcagtatgttggcatgattgtccaccgttggggcactta tcagcacctcatcgcaagtacaagtattgcgctttgcagtagaaaagaaagcgatgaaagtttttcccaatacgctttaa aggaaacagcagcattacaatgtgttgacgatgaagaacttgcctctacattggaaactgagtctttaccggatcacaac gaacaattcaacgagttagagcccgattatggacaagaaggaacaggatcgaacatggaagaggtacctgattattcaga cgatgaagatgacagtccaggcagagctaatgcatatgaagcattattcagacagcgtttcgaaacccaatataatagat atggaagacaagaggcgcacttaccaggacatcgcatgggtttgaacagtagtcatgtatcaagacagagactatatcag acactaagattaagaaatggagcttcatctgaatatgggcgatctacacatcaaggctataaccagcagaatcatgtgca gaaatactcccgagatccgtatgatcaaaggtacaactacgtttaa |
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Protein
| Protein ID | pfu_aug1.0_9.1_43410.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9.1_43410.t1 MCENLTLLDVFDIDYVTQILEIRHKNQNPYTNVGDILISINPCSDIQIYRAEQHEKYSHAIKQSANPPHVFWTAEVAKRN MRSSQEEQCIVVTGESGAGKTENTKHVLNHLFRSTKCKHPDLVSKIEQANPLLELFGNAVTELNQNSSRFGKLVELHYDG NGEIVGGKIDTFLLERSRVVHHGDRETNFHVFYGFFAGFQSSSLKDHYLLENPSSYRILRDTEDCNDSTSGIFSVEEKEK YKSQYLTAEHILTEHFKCSVEDTTMEDFVESLCSTVTYSKNEKIVRGKSKCQAEEERDAVIKHLYKLLFETVVRLVNESI KPATSAETTLGILDVSGFEKLEQKQNNFEQLLINITNEILNQYFRKAVFTAENDDLFKEGVTMSTSYTDHDSSNEVLHLC LGTKERTGILRLIDEELQSSEPTDSSLVRKYDYHFSACKSYQTVKDGKCFAVNHYADLVNYNAEGFMSKNRSRLSQGMLE CLQKSKNRFVNSGNPADKGKKAPVRCGKLNDSSAKQYRESLQHLTDYLSKTRPLFIRCIKPNRQCEDSHFDADYVKQQLL YSGIRELIKIRRDGFPYRFTFEQFCKRFSLLTTECNIERSASEKCRDILRVLRTSGNDSDPALIGKTKILLKACAMEELT EQVEVKRTEEEERVRKIEAEKREKRKDSLRKRKGVSFDSTLKTENEKDKKEDDQASLPSSPPPSYTSERETKEENTKETA NPNNLHKHPCTQQKLQISALPDYRAFNVSTEKFMNIISNDTSYRAARMTCTQNIDVVSLNNSAISNHSLMTSDIVNRTLR GNETDMINGTSNSNTQPPSEFLREEGRQLTFSHSMLLSRDKFQSCDIHIGDFNGNTHQMKDFDVFNHACNSCLNEKCLGN FLNEDRESFKQYCNYHTGSFIQNYGLMMILAIAPIILGYAGTVACRLHMQKFSFNLALLLAPIGSYVFLYFTGLCKDENL LEGEIKCSAVESNDLYITNSIIVVLTFSIMLICWHLWWPSCERMAKLERLFSLPIVDGLLVPLSLLFRRRLDHLDEKDHK KEQQNDTENKPRRKKTRPVVYVCATMWHETKQEMTQLLKSLFRLDFFHSQNQMAEKNFNVELEYFEVKIHVIFDDAFITD AKTRNRKPNKWVEQLVNCIEEAAESVAKGKIHWDSQPRKVLTPYGGRLVWTMPGGTKMIFHLKDKDKIRHRKRWSQIMYM YYLLGYRFMGSIGDDGYSECAQKRKFKKNASILNHFNRPTYKKAANTFILTLDGDVDFKPEAVNLLLDRMKKNIKVGAVC GRIHPIGSGPMVWYQKFEYAVGHWLQKAAEHVFGCVLCCPGCFSLFRASALMDDNVMKRYTTPPEEAKHYIQFEQGEDRW LCTLMLQQGYKIDYCAGADALTYAPETFNDFFVQRRRWAPSTMANIIDLISSWSTTVKENDNISSLFMFYQLVLLMSSLL GPGMVTLMIAGSYSAVFSFNAWYGLLLAVLPVATYVFVCIRTKNDTQIKVAGLLSSMYAIVMVIVTVGMLINLLSEPIYS PNIIFVEIIAAIFVSAGMLHPKEIGNLFYGTLYYLTVPSTFVFLTVYYICNINNVSWGTRETSKVADSLVYENAYHSQPE NQGLAMKIAKKLGLLHLKKELNTFIKILNSDQDDPKENKSSKGQLENQAKTSVIPMPFDKDKPINEKAWCSEKYLGQKVG EKCEQDEAEFWNDIIEKYLTPLIEDKEKKEEIEKDLLDLRNNVVFGFFLLNSLFVIFVFQLQINKDKLKNFFLLGEYEPV SLAFLAVFAVVILIQYVGMIVHRWGTYQHLIASTSIALCSRKESDESFSQYALKETAALQCVDDEELASTLETESLPDHN EQFNELEPDYGQEGTGSNMEEVPDYSDDEDDSPGRANAYEALFRQRFETQYNRYGRQEAHLPGHRMGLNSSHVSRQRLYQ TLRLRNGASSEYGRSTHQGYNQQNHVQKYSRDPYDQRYNYV |
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