Gene
| Gene Model ID | pfu_aug1.0_9026.1_45985 |
|---|---|
| Locus | scaffold9026.1 : 6156 ... 38276 : + |
| To GenomeBrowser | scaffold9026.1:6156..38276 |
| Genes list of scaffold | scaffold9026.1 |
| Synonym | pfu_aug2.0_19.1_29999 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9026.1_45985.t1 | 9 | 1 | Collagen | 21 | 57 | 0.0 | 169.8 | 1.4e-09 | 1.0e-05 | 24.9 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 2 | Collagen | 62 | 105 | 0.0 | 169.8 | 4.8e-06 | 0.035 | 13.6 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 3 | Collagen | 242 | 258 | 0.0 | 169.8 | 4.6e-06 | 0.034 | 13.6 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 4 | Collagen | 277 | 335 | 0.0 | 169.8 | 3.5e-13 | 2.6e-09 | 36.4 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 5 | Collagen | 313 | 370 | 0.0 | 169.8 | 6.1e-12 | 4.5e-08 | 32.5 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 6 | Collagen | 380 | 433 | 0.0 | 169.8 | 1.8e-12 | 1.3e-08 | 34.2 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 7 | Collagen | 420 | 475 | 0.0 | 169.8 | 6.1e-13 | 4.5e-09 | 35.7 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 8 | Collagen | 549 | 578 | 0.0 | 169.8 | 1.8e-07 | 0.0013 | 18.2 |
| pfu_aug1.0_9026.1_45985.t1 | 9 | 9 | Collagen | 590 | 620 | 0.0 | 169.8 | 1.3e-08 | 9.8e-05 | 21.8 |
| pfu_aug1.0_9026.1_45985.t1 | 2 | 1 | C4 | 618 | 680 | 0.0 | 228.7 | 1.1e-25 | 8.4e-22 | 77.2 |
| pfu_aug1.0_9026.1_45985.t1 | 2 | 2 | C4 | 683 | 795 | 0.0 | 228.7 | 0.0 | 2.8026e-45 | 153.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9026.1_45985.t1 | gi|308482253|ref|XP_003103330.1| | CRE-LET-2 protein [Caenorhabditis remanei] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9026.1_45985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9026.1_45985.t1 atgcaatggaacagctgtgagttatcctatactgttcagtatcagtaccgtagctaccacggtccaccaggatttgatgg tccacctggaccaaagggtttctctggacctccgggaccaaggggttttgaaggcttcaaaggtgaaagaggtattaagg gaaacccaggtatcaatttagttggtatgaagggtgtacctggtccccctggacctcagggtcctcctgggcccccaggg gaataccgtggggaattcactggtggaaacatcacagagcggggacccaaaggagatcgtggtactcctggacctaggca tcatcttgaatatgacatcaaatcattcttcaagggttaccgggtattgatggacttccgggaagagatggtttaccagg agagaagggagacccaggaccgattggagaggcaggacgatcaattccaggcgcatctggtccaacaggattgcctggta tcaatggtagaccaggagataaaggagagaagggattccctggacttccgggtattcctggtaattctacccgaggcaga cccgggcttcccggtgcaaaaggagagaaaggtttctcaggacgaccaggaggcccaggaagggacggactcccaggttt acctggaacgaaaggtgacagaggtggatcttgccaggactgcaccccaggctttaaaggagagaaggggtcctctggac tgccagggagacagaggtttccctggggaaccaggacctgaaggacctccaggaaatgacgcaaatatcaataatatccg aatgcccgattgtcaaaagggagatccaggaccaagtggactaccaggaacaaagggagaacgaggtgtgtcaggtacac ctggacccccaggattagagggtctccctggccttaaaggagataggggtcagcctggattacctggacgggatggtgaa ccgggatcacctggtctaccaggtgtacctggtcttaaaggagagcgtggtgttggtttgccaggattaccaggagatag gggtttaccaggtgacaatgggcttccaggcttaactggcatggaaggtcaaaagggagaaccaggagagtcatttacag tgaatccagatattctgaaaggtgttaaaggcgaacgtggtctaccaggaaatcctggtattccaggcagagatggcagg ccagggataaaaggagaccgtggtaatccaggaattcctggaattgaaggccttcctggaatgaagggaggtcgtggtga cgatggaatccccggagaatctggtcccaggggatcacctggacttccgggcatgaaaggagaaccaggccagagaggat ttgacgggctcccaggcatgaagggcgagtctgggataccaggagaatcaggagctattggtagatatttacactacata aacatgttgaattttggaatggactgccaggacaagatggcttccccggatctaagggagaacccggagcaccaggtatt ggattaccgggagctaagggagagcgaggattggatggactacctgggttttaggaagatttccatagaatttgatgatc tcataattagtccacgtcggatactgtcttatatggaaagtgagtctggagcccgtggtataccaggtgaggatggagga cccggaattccaggtaccataggtcaaaagggtgagcccggcccacagggtcctcctgttgacataccaagtaacttccg tattaagggagagcccggtgttccaggccttccaggacttgccggccttaaaggagaaccaggacaagtcggacccagag gattcccaggttgggcaggttcatgtatgagacgattcagcacaatgccattcctattctgcaacaccaacaatgtttgt aactatgccagtcgtaacgacaaatcctattggctgtccacgaacgccccaatgccaatgatgcctgttggtgaacagga aattccacggtacatcagtagatgtgtcgtctgtgatgctccaactaatgtgatagccgtacacagtcaaactcttgtgt tcccagaatgccccattggttggcagggactttgggtcggatacagttttgccatgcacaccggcgctggaccaagcggt ggcggtcaatcactctctagcccaggtagctgcttagaagatttccgtgccacaccctttattgagtgtaacggggctgg tggcacgtgccacttctttgccaataaatacagcttctggctaacaactgtagaagctaatagtcaatttattacaccta tacaacagacattaaaggccggtaatttgagaactcgtgtatcaaggtgccaagtttgtatgaaacttcaataa |
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Protein
| Protein ID | pfu_aug1.0_9026.1_45985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9026.1_45985.t1 MQWNSCELSYTVQYQYRSYHGPPGFDGPPGPKGFSGPPGPRGFEGFKGERGIKGNPGINLVGMKGVPGPPGPQGPPGPPG EYRGEFTGGNITERGPKGDRGTPGPRHHLEYDIKSFFKGYRVLMDFREEMVYQERRETQDRLERQDDQFQAHLVQQDCLV SMVDQEIKERRDSLDFRVFLVILPEADPGFPVQKERKVSQDDQEAQEGTDSQVYLERKVTEVDLARTAPQALKERRGPLD CQGDRGFPGEPGPEGPPGNDANINNIRMPDCQKGDPGPSGLPGTKGERGVSGTPGPPGLEGLPGLKGDRGQPGLPGRDGE PGSPGLPGVPGLKGERGVGLPGLPGDRGLPGDNGLPGLTGMEGQKGEPGESFTVNPDILKGVKGERGLPGNPGIPGRDGR PGIKGDRGNPGIPGIEGLPGMKGGRGDDGIPGESGPRGSPGLPGMKGEPGQRGFDGLPGMKGESGIPGESGAIGRYLHYI NMLNFGMDCQDKMASPDLRENPEHQVLDYRELRESEDWMDYLGFRKISIEFDDLIISPRRILSYMESESGARGIPGEDGG PGIPGTIGQKGEPGPQGPPVDIPSNFRIKGEPGVPGLPGLAGLKGEPGQVGPRGFPGWAGSCMRRFSTMPFLFCNTNNVC NYASRNDKSYWLSTNAPMPMMPVGEQEIPRYISRCVVCDAPTNVIAVHSQTLVFPECPIGWQGLWVGYSFAMHTGAGPSG GGQSLSSPGSCLEDFRATPFIECNGAGGTCHFFANKYSFWLTTVEANSQFITPIQQTLKAGNLRTRVSRCQVCMKLQ |
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