Gene
| Gene Model ID | pfu_aug1.0_9046.1_24518 |
|---|---|
| Locus | scaffold9046.1 : 4020 ... 18653 : - |
| To GenomeBrowser | scaffold9046.1:4020..18653 |
| Genes list of scaffold | scaffold9046.1 |
| Synonym | pfu_aug2.0_267.1_23778 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9046.1_24518.t1 | 2 | 1 | Ion_trans | 90 | 130 | 1.1e-24 | 86.7 | 0.094 | 160.0 | 1.4 |
| pfu_aug1.0_9046.1_24518.t1 | 2 | 1 | PKD_channel | 108 | 137 | 0.0 | 474.3 | 0.52 | 860.0 | -2.0 |
| pfu_aug1.0_9046.1_24518.t1 | 2 | 2 | PKD_channel | 157 | 578 | 0.0 | 474.3 | 0.0 | 0.0 | 474.3 |
| pfu_aug1.0_9046.1_24518.t1 | 2 | 2 | Ion_trans | 363 | 571 | 1.1e-24 | 86.7 | 7.0e-28 | 1.1e-24 | 86.7 |
| pfu_aug1.0_9046.1_24518.t1 | 2 | 1 | EF-hand_1 | 615 | 640 | 7.5e-06 | 24.8 | 1.3e-05 | 0.022 | 14.0 |
| pfu_aug1.0_9046.1_24518.t1 | 2 | 2 | EF-hand_1 | 649 | 669 | 7.5e-06 | 24.8 | 8.1e-05 | 0.13 | 11.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9046.1_24518.t1 | gi|156401013|ref|XP_001639086.1| | predicted protein [Nematostella vectensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_9046.1_24518.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9046.1_24518.t1 attaatcaacatgacctcgcgggacaatcgtcctagtagtggtagaacagcttgggacgacatggattataatgcaggag gccacggtcgaccggataatcagttcgattttgatccccgagacgaccctgatttaccgagggccatggaaaatgacatc tatatggacaagggtgacaggaacccctccaggaacaccacagtagccaccacagggacaaagaaaaagttgggatgctg ggggacgttttgcaaaggtgtccgatcactatgggccacacgtcaaacagaagaaaccaagggaaaccgagaactacatg tgaagacgactctgagagaactgatcatctacattgtgtttctggtcattctctgtgtagttacatttggaatgacatca acaacaatgtactactacaccaaggtaatgaacgacctgtttgtggagaccactcacacagggggcggatccttcaagac catcaccaatgttaacgacttctggaagtttgctagagagaccctggcaaagtcccttcactgggaaacctattataacg gacagaatatcacagaccccgccgcccaaggttacatctactatgagaacaaactactcggcgtcccccgtattaggcag ctaaaagtcagcagcaactcctgcgtggtacatgatgacttcaaagatgtaattcgggaatgttacgattcgtactcctc aaatcttgaagataaaaccactgtgactaaaggcaactacacagcttggacatacaggtcagaagatgaccttgatgggt catcatattggggcaaactgacccactacagcggagcaggttacgcacagaatctgggaagaactaaagccgagacacaa gccataattgaatacctcttcagtgaactttggattcaaagagggactagagttgtgtttatagattttaccgtttacaa tgctaacatcaatctcttctgtgtggtgaagctcgtagtggaattccctgcgactggtggcgccatctcgtcctctgatt tccgtactgtcaaactgataagatatgtcaccattaaggattacttcatcatggcctgtgaatttatcttcgtattgttc atcgtctactacatgattgaggagggcattgagatcaagaagcacaagctgtcctacttcaagagcttctggaacatcct tgacattctggtgatcatcattgcgatcctctgtgtggcgtttgacatttatcggcagatcgcagtagacaagaaactga gtgagctcattggtaaccctgacgagcatgccgacttcgacttcttgagctactggcaaactcgatttgataacgccatt gccattgccgtcttctttgcttggatcaagatcttcaagtacatcagcttcaacaagacaatgacccagctgtcctccac cctcggtcgctgtgccaaggatctggccggatttgccgttatgttcctgatcatcttcttggccttcactcagctcggat atctgttgtttggcacccaagtcaaggacttcagcagcttccaagactctttcttcaccctgttccgtatcattctggga gactttgacttccatcagctggaggccgccaacagagttttgggtccaatattcttcatcctctttgtattcttcgtctt cttcgttctgatcaacatgttcttggctattatcaacgacacttactcggaggtcaagggcgatatggccaaccagaaga atgagttcgaaatgacagactacttcaagagaggctacatgaagatggttgagaaactgaacttcaaacgagacaagatt gttgatatccagaaagctcttcaaaatgctgacatcaaccaggatcagaaacttgactttgacgaatggcgacaggatct caaaatccgaggatatgctgatggagaaatcgaggctctgttcgccaagtatgacattgatggtgaccgtgttctggatg aggaagaacagcgacgcatgcaggaagatctcaataaccaaaaggctgcacttaacaaagaatacgaggaacttgacaaa agtggaaacagaccaagcacagctagacaggccagtagtcgcacaagtttcaacgaagacagtggagaagacagtgacga cgaacgcagtggttcaaaatcaacacgatcgggtcgtgcttcaaatggtgtttcatacgaagaatttacagtgttatcac ggagagtggacagaatggaacattctattggcagtatagtttcaaaaatagacgctgtactcgtcaaattagaagccatg gaaaaagcaaaattaaaaagaagagaaaccatgggcaaaatattagatagcataacagagtctgatggcaatagtgacga agtaaaaagagagcagatggaaaaattagtacgagaagaattggaaagatgggattccgagacctcattttcccccagtg gtcgtggggcttcacccagtagtggcagcagtgcccgtggggtcagatcacgatctagaccagggtcaggccaacaaggg gatttttatgacgcaagagggtatcacgtttag |
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Protein
| Protein ID | pfu_aug1.0_9046.1_24518.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9046.1_24518.t1 LINMTSRDNRPSSGRTAWDDMDYNAGGHGRPDNQFDFDPRDDPDLPRAMENDIYMDKGDRNPSRNTTVATTGTKKKLGCW GTFCKGVRSLWATRQTEETKGNRELHVKTTLRELIIYIVFLVILCVVTFGMTSTTMYYYTKVMNDLFVETTHTGGGSFKT ITNVNDFWKFARETLAKSLHWETYYNGQNITDPAAQGYIYYENKLLGVPRIRQLKVSSNSCVVHDDFKDVIRECYDSYSS NLEDKTTVTKGNYTAWTYRSEDDLDGSSYWGKLTHYSGAGYAQNLGRTKAETQAIIEYLFSELWIQRGTRVVFIDFTVYN ANINLFCVVKLVVEFPATGGAISSSDFRTVKLIRYVTIKDYFIMACEFIFVLFIVYYMIEEGIEIKKHKLSYFKSFWNIL DILVIIIAILCVAFDIYRQIAVDKKLSELIGNPDEHADFDFLSYWQTRFDNAIAIAVFFAWIKIFKYISFNKTMTQLSST LGRCAKDLAGFAVMFLIIFLAFTQLGYLLFGTQVKDFSSFQDSFFTLFRIILGDFDFHQLEAANRVLGPIFFILFVFFVF FVLINMFLAIINDTYSEVKGDMANQKNEFEMTDYFKRGYMKMVEKLNFKRDKIVDIQKALQNADINQDQKLDFDEWRQDL KIRGYADGEIEALFAKYDIDGDRVLDEEEQRRMQEDLNNQKAALNKEYEELDKSGNRPSTARQASSRTSFNEDSGEDSDD ERSGSKSTRSGRASNGVSYEEFTVLSRRVDRMEHSIGSIVSKIDAVLVKLEAMEKAKLKRRETMGKILDSITESDGNSDE VKREQMEKLVREELERWDSETSFSPSGRGASPSSGSSARGVRSRSRPGSGQQGDFYDARGYHV |
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