Gene
| Gene Model ID | pfu_aug1.0_9073.1_31711 |
|---|---|
| Locus | scaffold9073.1 : 10875 ... 17795 : - |
| To GenomeBrowser | scaffold9073.1:10875..17795 |
| Genes list of scaffold | scaffold9073.1 |
| Synonym | pfu_aug2.0_569.1_30925 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715624 (MgC1q45). 84 bits, 2e-14 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9073.1_31711.t1 | 1 | 1 | C1q | 98 | 224 | 8.0e-25 | 87.2 | 2.9e-28 | 1.4e-24 | 86.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9073.1_31711.t1 | gi|325504389|emb|CBX41694.1| | putative C1q domain containing protein MgC1q45 [Mytilus galloprovincialis] | 2.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_9073.1_31711.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9073.1_31711.t1 atgtcaaatcttcttatcggacagatagttggtatcctagccattgatcctaacggtttatgttcccagatattggacat cgactgtaataactacactcctgttgagccaaatgaggttgtctgcggcacaaataatgtagatttaccgatgacaaaca atgaatcagaactacaagtaatgaagcaggagatagccaacctgaagttgcaagtaggaaaattgacgtcaaccgttaca cagatgaaagcacagtcagccgctcatgctaatacaacgaggacgtattcgttctatgcatattccactcaaacacaata cctgggagctcaacagcctataatgttcgactacacagaaacaaatatcggaaactgttttaacatacaaacaggaagat tcaaagcaccggtacgaggactgtacttcttttccggaaacatcatggcggaaccaggtcattatttacacattgaggtc gtgaaaaatggacggcgcgtgtcaagcatctttgccggtaaaagtgcgggaacattcgataacaacaccggaaatgccgt cataaatctattattacaagctggtgacgaagtatggatccgggatcagaatgaccagaatggcgttgctgttgtcagta gaacgtatgctatgttctcaggatttctaatcagtcaaaatgtttga |
|
Protein
| Protein ID | pfu_aug1.0_9073.1_31711.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9073.1_31711.t1 MSNLLIGQIVGILAIDPNGLCSQILDIDCNNYTPVEPNEVVCGTNNVDLPMTNNESELQVMKQEIANLKLQVGKLTSTVT QMKAQSAAHANTTRTYSFYAYSTQTQYLGAQQPIMFDYTETNIGNCFNIQTGRFKAPVRGLYFFSGNIMAEPGHYLHIEV VKNGRRVSSIFAGKSAGTFDNNTGNAVINLLLQAGDEVWIRDQNDQNGVAVVSRTYAMFSGFLISQNV |
|