Gene
| Gene Model ID | pfu_aug1.0_9091.1_67985 |
|---|---|
| Locus | scaffold9091.1 : 46626 ... 60704 : + |
| To GenomeBrowser | scaffold9091.1:46626..60704 |
| Genes list of scaffold | scaffold9091.1 |
| Synonym | pfu_aug2.0_2004.1_15347 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | myosin regulatory light chain |
| Description | Myosin regulatory light chain full sequence. BLASTP top hit to AB444943 (Placopecten magellanicus). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9091.1_67985.t1 | 3 | 1 | EF-hand_6 | 153 | 182 | 5.2e-12 | 44.5 | 4.3e-10 | 9.2e-07 | 28.2 |
| pfu_aug1.0_9091.1_67985.t1 | 3 | 1 | EF-hand_1 | 153 | 181 | 1.6e-11 | 42.6 | 1.4e-10 | 2.9e-07 | 29.3 |
| pfu_aug1.0_9091.1_67985.t1 | 2 | 1 | EF-hand_7 | 154 | 194 | 1.9e-13 | 50.3 | 1.0e-09 | 2.2e-06 | 27.7 |
| pfu_aug1.0_9091.1_67985.t1 | 2 | 2 | EF-hand_7 | 223 | 281 | 1.9e-13 | 50.3 | 3.6e-08 | 7.7e-05 | 22.7 |
| pfu_aug1.0_9091.1_67985.t1 | 3 | 2 | EF-hand_6 | 223 | 249 | 5.2e-12 | 44.5 | 3.3e-06 | 0.0071 | 16.1 |
| pfu_aug1.0_9091.1_67985.t1 | 3 | 2 | EF-hand_1 | 223 | 249 | 1.6e-11 | 42.6 | 2.4e-06 | 0.0051 | 16.0 |
| pfu_aug1.0_9091.1_67985.t1 | 3 | 3 | EF-hand_6 | 271 | 283 | 5.2e-12 | 44.5 | 0.99 | 2100.0 | -0.9 |
| pfu_aug1.0_9091.1_67985.t1 | 3 | 3 | EF-hand_1 | 271 | 283 | 1.6e-11 | 42.6 | 0.19 | 410.0 | 0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9091.1_67985.t1 | gi|1389849|gb|AAB02931.1| | myosin regulatory light chain [Placopecten magellanicus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9091.1_67985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9091.1_67985.t1 atggacagcgcgctgcgacgtagatgtcacgtgacgtacaccacccttcggttaccgagaactcggaacgatgcctcgtt gccacggggccacgtgcggggagctcacagcggagtctatacagctgacaccaatcgaatcatcccttctatggtgcacg cgcatgacgtcacatgtggagtggaatgcaggataagaggaaccgatggtgattttcactttcgtagcgctctcctagaa gcccggtcgcgagtgagtgaagctgtgcgggtcaaacgaccaagtttttatattagtttgaagaggtttaacataaaagg gaaccaaccatgtccgacgatgataagaaaagtcgggcggagagagccacttccaatgtttttacgcgcacagcaacaga aggcaagagccgcaacatcaaatgtgttgaccaagttcaatcagaaagtcatccaggaaatgaaagaggccttcacaatg attgatgtgaacagagatgggtttatcgacctcaacgatctcaaagaaatgttctcgtcattaggaaggacgccagatga taaagacttgaaagctatgctcgcagaggcacctggtccattaaacttcacaatgttcctgtcactcttcagtgaaaagt tgagcggtactgatccagaagacaccatcagacaagcattcaaaatgtttgacaatgaaggcaaaggcaaactaccagaa gaatatattaaagatttattagaaaacatgggtgataacttcacgaaagacgagatgaggcaaacattcaaagaagcacc tcttgaaggaggaaaattagattatgaaaaattcgtagcaattatcaagggtagtgagcaggatgacgctgcgtaa |
|
Protein
| Protein ID | pfu_aug1.0_9091.1_67985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9091.1_67985.t1 MDSALRRRCHVTYTTLRLPRTRNDASLPRGHVRGAHSGVYTADTNRIIPSMVHAHDVTCGVECRIRGTDGDFHFRSALLE ARSRVSEAVRVKRPSFYISLKRFNIKGNQPCPTMIRKVGRREPLPMFLRAQQQKARAATSNVLTKFNQKVIQEMKEAFTM IDVNRDGFIDLNDLKEMFSSLGRTPDDKDLKAMLAEAPGPLNFTMFLSLFSEKLSGTDPEDTIRQAFKMFDNEGKGKLPE EYIKDLLENMGDNFTKDEMRQTFKEAPLEGGKLDYEKFVAIIKGSEQDDAA |
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