Gene
| Gene Model ID | pfu_aug1.0_91.1_65230 |
|---|---|
| Locus | scaffold91.1 : 52511 ... 109895 : - |
| To GenomeBrowser | scaffold91.1:52511..109895 |
| Genes list of scaffold | scaffold91.1 |
| Synonym | pfu_aug2.0_94.1_13580 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_91.1_65230.t1 | 5 | 1 | RCC1 | 326 | 368 | 0.0 | 176.0 | 1.5e-11 | 5.7e-08 | 32.8 |
| pfu_aug1.0_91.1_65230.t1 | 4 | 1 | RCC1_2 | 355 | 384 | 9.0e-20 | 69.7 | 1.5e-07 | 0.00056 | 19.4 |
| pfu_aug1.0_91.1_65230.t1 | 5 | 2 | RCC1 | 371 | 413 | 0.0 | 176.0 | 9.7e-12 | 3.6e-08 | 33.4 |
| pfu_aug1.0_91.1_65230.t1 | 3 | 1 | MIB_HERC2 | 639 | 672 | 7.6e-27 | 93.0 | 0.7 | 2600.0 | -1.6 |
| pfu_aug1.0_91.1_65230.t1 | 1 | 1 | Cyt-b5 | 641 | 713 | 9.4e-21 | 73.4 | 5.2e-24 | 1.9e-20 | 72.4 |
| pfu_aug1.0_91.1_65230.t1 | 3 | 2 | MIB_HERC2 | 919 | 979 | 7.6e-27 | 93.0 | 2.1e-30 | 7.6e-27 | 93.0 |
| pfu_aug1.0_91.1_65230.t1 | 5 | 3 | RCC1 | 1751 | 1780 | 0.0 | 176.0 | 4.2e-07 | 0.0015 | 18.6 |
| pfu_aug1.0_91.1_65230.t1 | 4 | 2 | RCC1_2 | 1767 | 1795 | 9.0e-20 | 69.7 | 1.2e-09 | 4.3e-06 | 26.1 |
| pfu_aug1.0_91.1_65230.t1 | 5 | 4 | RCC1 | 1783 | 1826 | 0.0 | 176.0 | 5.0e-18 | 1.9e-14 | 53.6 |
| pfu_aug1.0_91.1_65230.t1 | 4 | 3 | RCC1_2 | 1819 | 1849 | 9.0e-20 | 69.7 | 4.7e-07 | 0.0018 | 17.8 |
| pfu_aug1.0_91.1_65230.t1 | 5 | 5 | RCC1 | 1837 | 1886 | 0.0 | 176.0 | 7.5e-16 | 2.8e-12 | 46.6 |
| pfu_aug1.0_91.1_65230.t1 | 3 | 3 | MIB_HERC2 | 1841 | 1854 | 7.6e-27 | 93.0 | 0.79 | 2900.0 | -1.8 |
| pfu_aug1.0_91.1_65230.t1 | 4 | 4 | RCC1_2 | 1873 | 1895 | 9.0e-20 | 69.7 | 7.8e-06 | 0.029 | 13.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_91.1_65230.t1 | gi|327268092|ref|XP_003218832.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_91.1_65230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91.1_65230.t1 atgcaacacccgtcgcaacagctccatggaaacctgtcaaattcggtgattgtctcgatgtacatactggtgtacacacc agggcaatatagcaacagaatgagctggtctgcggatacccgtctgcgtccccagcagagactggacaagaaatggctca agacggatctacagttggctttcaatcgggatggattgagcaggctatggaacgagctggtcaaggatggggagatagcg gtcagtaataacgatggactgatcaacagcgctggagcactggcgagaaaaggggagacagggaagtattactgtggaat gagagtgctgtcctgtggctgttgtgatggacattgtggacctaacaatggatgtaactgtccaccctgccaaaaactgg acaaagaggaggaggatcagagaaaggaggagtctacccgacccaaaccctcacaacctctcatcgactcatggacttgg ggtaaacaaccagacacagcacagttaaaggaatgtatgaagtcgttgctgtacgagcaccagaagctatgtacagaggc tgcctgttcttctttgtctgtcacacgtctgcagcagagacttgccgtattggagaggttctttgttgccatggcgagac aggctccagtggaaggacgtacccccaccaagaaaagtcaggccaatcagaccaaccttagcaagcagaagagttcagtt aagcctgcagagaaggctacaacgggccttgccagagttgggtctcgtgctgccttgagctttgcctttgcattcctgcg tcgtgcttggagatcaggagatgactctgatttgtgtagtgagcttctgaacgagtcgttagaagcactgcagtctttac ctgaggccacactgtttgaggaaggagccgtgtctactgtatggctagaggttgtggagagggcatccaagttcttacat agtgttgttgcagggggaaagggagacaacttcaggctaggacatggaacagaggaccatgtacgacaccccaaacaaat agagagcttatctgggaagaaagtcatcaacattgctataggctccatgcattgtatagccgtgacagaggagggggagg tgtatgggtggggaaagagtgagcaaggacagctgggtgacacacccaccaacagcagggtggagcccatgttacttccg gggctagagggcaagaacatcataggaggatgttgtgggccttcacaggagaaagaatgtgacaagggagatgactctaa gcttactgatcccctagagggcgccagcagtgtgaagtcagaagaagatttactccagacagatcaagatttagaggagt atggggccaccatcccactagtacaactaatacagcagctactcaggaattccctgtctcattccctttccaagctggag gatctatcccaggaaagtatgctgaagacagaggagggggattcctcagatatgtccccctctctggatcttctcctgca ggtccagagattactggtatccaggatattccctcgtgaccatgaaagcctcgctgctggcttagattcagaggctgaga tgttaggtgccggagctttactaaggaagtatgtatcgttgctgtgtaatcatgtgaccactatattaccacgagccgca agtctggcgtgtatcagcagtaaacatttctctgtcgtctctaaaatcatcaacaaggatgttacagtacaggcatctaa gtcagtacctgtactagaggagatactggacgtcatcgatgcctttaaccgtctagctccaggactgaacagggacgaca aggaggatctggcctggcctggtgtctggagttataccttggagaaatatactcagaagacatcagaggacgtacagatt atacgtaaagctgatctggaaaatcacaacaaagatggaggactgtgggtggtcatacacggtaaagtttacgatgtaca ggaattcaaatcccaggcaccatgtgggagggaactactcatgcagtatgcagcttgtgatggcactgaagcttttgaac tagagaatcattcagaccatgctagagagatgatgaaggcttactatgtaggacagtaccttgatcctgctaaagacata gtacagacgacagacagtagtacagcttcctcccccctgatggacgtggaacgtcacatggggatgttactagggcttca cgctgcataccaagcccggagcagtccattatcacaggaggagagggagtatcagcactggctacaggcagatttcttta tggggggactacaggtgctacagcccaagaaccactatgaggaggagaaaggagaaagtaggagtagtgcatcttctaat actacaccagaattctgtaaatcttcttctgcaaatggtttcacccttaatgcatgtaatattatacatgtgcaggagag actaagtttaggagcattgccacattcccgcttccttcttgctactctaggaatcctagtagctgaacaccaggctaaca gtctgagtctgttgttaaactccggagctctggggttaactcaaacacttcttagacttgtaggtcctgatttagacaaa gtgatgcaggataactccacttcactatgtgctgttttagaagaacagaaacacaagaagccggttacacaggtccctat aacaggccctgacctagcgtcaatgatgaaaataggcactagggtagtcagaggtgtcgactggaaatggggagatcagg atggccctcctcccagtatggggcgtgtaattggagagttaggagaggatgggtggataagagttcagtgggacacaggc agtacaaacagctacaggatgggcaaggaggggaaatatgaccttaagcttgcagaacctccagagatgcctgataatga tgaggatgaggaggaagatatcgaaaatgcagagattgtgagaccagagagtaagcatcctacacagctgatcagacgtg ccacacttaacatgctgaagaacctatctatatgttgtggagtatacacagagagtacacagaaagaagctgtaaataca ctatgtggactgatgaggaaaatcgtagacgctggacataattacggactaaacactagttttatcccagcccaaattgc tggagaacagtactacagctggtgttctctgggctttatacggtgtatagccaccggatcctcaatctgccatgccctca gttcccctaagtggataaccctcctactgaagatcctagaggaggagcgaagccccacccagaggaacgtgatgaaacag atcctgaccctccagttactacggtccgtgctcccccactgggaccctgctgtagagggacagagaagtggcatggtggt acagaaactatttgatctacttgggcatgtaatcatggggtgtgccaatgaccacaccttgtacactacagctgatacat acaggaaaggacacaaacaaaaggtcccagtgtcactgactgcctcctacaccagtactatagctgaagagatagtggcc gtgatcagaactcttcataacaatgactgctggactgaccatatcaacaagtatataactgaccaactgaccagtgtcac tgatcttatggagggtcagacttgtaaagaagaccagactgacaagttgccgtcaatcatggcagctctaactgtgattg gtggaatagataacagaccacaccttggaggtggagtcaaacatgagacatatggaaatggtgtcatagcaaagatcaca cctaaaggaaaaatacaagtacagtttgaagatggatacctcagagcctgtagactcactgaattagtagctggtgccgc tttagcagtgtcccagtacttaatggctgtctgtaaccaacagtcagaggattcagatttatccgagtccgaaagtgagc atgaatcgtcaatccctccatccaaaccagaacctgtctcccatagcaacaatatacctaccacatcatctacaaaggcc aaaaaatccaaaccaaatcaagctcctttaccacctgtagttacacagctcatggaaatgggatttccaaagaaaaatgt ggagtttgctattaaagctatagggagtgacccatccccagcaggtaagcctggcaagcagagaaagaagacaatatata catcctcaggctccctgttagaggactggcacgcctgtgtgaaaaacatcaccgtgtcatcacgggaaaaccaggcacat cgactgataccaaccaactcaggatactggcaaagctcaggatcacagggaaagtatttcagatacatagaaatagccat taagaattgtcgtagtagtggaatagactgtaaagttcatggcctgtctgtcgttggtcgtctccgtgccgatgaggatg acacggccgctagttactcattcttagcatcggaccgtgaagacgaggaagatgagaaaacagtaacgttcgcagggaag aagatgaagaagtcaggagtaaatgacagttcatcagaggagaaccagaatcagctgaccgtagcccagatgtccccctc taagtcctcccgcccctcgcttgccaaaatcatcctctcacaggagtcggatacagtcaaacagcaagtcttaagtcatg tactgacagctcttcagatcatgtatgccagagaagcggtagttgtatcccttgccaaagaatcacagcctgtccctgtt atgacagagaccaaggtgcccctccctcctcccaccatgtcagctagtgtagtgacggctgagagcctggatgagaacag tgctgccacctctaggacagagaggcagaataacgaggaagttgtagatcatgctgatattaatctgactttggccgaat ctggaactagttcagaacaggtcctcgtagctttggcttgtgacttgggtttggattctaagagtttctgtaaggaagct cacaaatgggcatggttcagacgatactgtatggcagctcgtgttgccacggcgatagttcagaggtcatcactcccagt accgtttgcagaggaggtgagaaagaagatccaggacatatctggtgacggagaagaattgtcgaaggatcacgagaatc atagtatcttcagacaggagcaagatgaacaactcttactttggctcaatagtccttgtgatcgtcccagagtgatagag tctttaaggggtaaagaggtagtagatatagcagcgggcggggctcacagtgcctgtgtgacagctaatggagagctgta tacctggggaaagggacgatatggcagactgggacatggggacagtgaggatcaacccagacctaagctggttgaggctt tgaagtcacagcgtgtcatagacgtagcatgtggaagtggtgacgcccaaaccttatgtattactgacgatgacaatgtg tggtcctggggggacggggattacggtaaacttgggcgtggtggaagtgatgggtgtaaggtaccgatgaaggtggactc tctccagggactgggtgtggtcaaagtggaatgtggctcccagttttcggtggctttgactaaaatgggagctgtatata catggttttatcttgcaattgtaggaaccacttatggttaa |
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Protein
| Protein ID | pfu_aug1.0_91.1_65230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91.1_65230.t1 MQHPSQQLHGNLSNSVIVSMYILVYTPGQYSNRMSWSADTRLRPQQRLDKKWLKTDLQLAFNRDGLSRLWNELVKDGEIA VSNNDGLINSAGALARKGETGKYYCGMRVLSCGCCDGHCGPNNGCNCPPCQKLDKEEEDQRKEESTRPKPSQPLIDSWTW GKQPDTAQLKECMKSLLYEHQKLCTEAACSSLSVTRLQQRLAVLERFFVAMARQAPVEGRTPTKKSQANQTNLSKQKSSV KPAEKATTGLARVGSRAALSFAFAFLRRAWRSGDDSDLCSELLNESLEALQSLPEATLFEEGAVSTVWLEVVERASKFLH SVVAGGKGDNFRLGHGTEDHVRHPKQIESLSGKKVINIAIGSMHCIAVTEEGEVYGWGKSEQGQLGDTPTNSRVEPMLLP GLEGKNIIGGCCGPSQEKECDKGDDSKLTDPLEGASSVKSEEDLLQTDQDLEEYGATIPLVQLIQQLLRNSLSHSLSKLE DLSQESMLKTEEGDSSDMSPSLDLLLQVQRLLVSRIFPRDHESLAAGLDSEAEMLGAGALLRKYVSLLCNHVTTILPRAA SLACISSKHFSVVSKIINKDVTVQASKSVPVLEEILDVIDAFNRLAPGLNRDDKEDLAWPGVWSYTLEKYTQKTSEDVQI IRKADLENHNKDGGLWVVIHGKVYDVQEFKSQAPCGRELLMQYAACDGTEAFELENHSDHAREMMKAYYVGQYLDPAKDI VQTTDSSTASSPLMDVERHMGMLLGLHAAYQARSSPLSQEEREYQHWLQADFFMGGLQVLQPKNHYEEEKGESRSSASSN TTPEFCKSSSANGFTLNACNIIHVQERLSLGALPHSRFLLATLGILVAEHQANSLSLLLNSGALGLTQTLLRLVGPDLDK VMQDNSTSLCAVLEEQKHKKPVTQVPITGPDLASMMKIGTRVVRGVDWKWGDQDGPPPSMGRVIGELGEDGWIRVQWDTG STNSYRMGKEGKYDLKLAEPPEMPDNDEDEEEDIENAEIVRPESKHPTQLIRRATLNMLKNLSICCGVYTESTQKEAVNT LCGLMRKIVDAGHNYGLNTSFIPAQIAGEQYYSWCSLGFIRCIATGSSICHALSSPKWITLLLKILEEERSPTQRNVMKQ ILTLQLLRSVLPHWDPAVEGQRSGMVVQKLFDLLGHVIMGCANDHTLYTTADTYRKGHKQKVPVSLTASYTSTIAEEIVA VIRTLHNNDCWTDHINKYITDQLTSVTDLMEGQTCKEDQTDKLPSIMAALTVIGGIDNRPHLGGGVKHETYGNGVIAKIT PKGKIQVQFEDGYLRACRLTELVAGAALAVSQYLMAVCNQQSEDSDLSESESEHESSIPPSKPEPVSHSNNIPTTSSTKA KKSKPNQAPLPPVVTQLMEMGFPKKNVEFAIKAIGSDPSPAGKPGKQRKKTIYTSSGSLLEDWHACVKNITVSSRENQAH RLIPTNSGYWQSSGSQGKYFRYIEIAIKNCRSSGIDCKVHGLSVVGRLRADEDDTAASYSFLASDREDEEDEKTVTFAGK KMKKSGVNDSSSEENQNQLTVAQMSPSKSSRPSLAKIILSQESDTVKQQVLSHVLTALQIMYAREAVVVSLAKESQPVPV MTETKVPLPPPTMSASVVTAESLDENSAATSRTERQNNEEVVDHADINLTLAESGTSSEQVLVALACDLGLDSKSFCKEA HKWAWFRRYCMAARVATAIVQRSSLPVPFAEEVRKKIQDISGDGEELSKDHENHSIFRQEQDEQLLLWLNSPCDRPRVIE SLRGKEVVDIAAGGAHSACVTANGELYTWGKGRYGRLGHGDSEDQPRPKLVEALKSQRVIDVACGSGDAQTLCITDDDNV WSWGDGDYGKLGRGGSDGCKVPMKVDSLQGLGVVKVECGSQFSVALTKMGAVYTWFYLAIVGTTYG |
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