Gene
| Gene Model ID | pfu_aug1.0_91.1_65233 |
|---|---|
| Locus | scaffold91.1 : 152344 ... 165535 : - |
| To GenomeBrowser | scaffold91.1:152344..165535 |
| Genes list of scaffold | scaffold91.1 |
| Synonym | pfu_aug2.0_94.1_13581 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Hand |
| Description | Best hit to AAD13185 basic helix-loop-helix transcription factor HAND2 [Homo sapiens] with 2e-51 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_91.1_65233.t1 | 1 | 1 | HLH | 75 | 126 | 1.1e-18 | 66.6 | 2.7e-22 | 2.0e-18 | 65.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_91.1_65233.t1 | gi|154147704|ref|NP_001093695.1| | heart- and neural crest derivatives-expressed protein 2 [Xenopus (Silurana) tropicalis] | 6.0e-40 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_91.1_65233.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91.1_65233.t1 atgagccatgaattctatcaatatccacaatacagatatgcggaccactgtgcagaagccacctattttcagaactgggt acttaacggggtcgggattaacggccaccacccggatattactgtgtcaccggaatcttatggaatgtgcacaccgagtc cgactgattatcacggggtcggaggtgacccatacgctcagaactttgaaagatgccttaaaagaagaacaacggcaaat aaaaaggaaagaagaaggactcaaagtataaacacagcattcgcacaacttagagggtgtattccaaatgttccatctga cacgaaattatccaaaatcaaaactctacgattggccactagttatatagcatatcttatggacgtactagctaaagacg atcctacacttacagaaaagggatttaaagcagaattaacaaaaaagaaagatgacagaaaggagaaagaaaaagagaaa ttgaaggaacaggtgcagcaagaaaattcccattcaagtggcaacgaacagtcaccaacgcagatttgtgataaaaaatc caaaggcaggacagggtggccgcaacacgtttgggcgtcggaactaaaatcctag |
|
Protein
| Protein ID | pfu_aug1.0_91.1_65233.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91.1_65233.t1 MSHEFYQYPQYRYADHCAEATYFQNWVLNGVGINGHHPDITVSPESYGMCTPSPTDYHGVGGDPYAQNFERCLKRRTTAN KKERRRTQSINTAFAQLRGCIPNVPSDTKLSKIKTLRLATSYIAYLMDVLAKDDPTLTEKGFKAELTKKKDDRKEKEKEK LKEQVQQENSHSSGNEQSPTQICDKKSKGRTGWPQHVWASELKS |
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