Gene
| Gene Model ID | pfu_aug1.0_911.1_29469 |
|---|---|
| Locus | scaffold911.1 : 5183 ... 16655 : - |
| To GenomeBrowser | scaffold911.1:5183..16655 |
| Genes list of scaffold | scaffold911.1 |
| Synonym | pfu_aug2.0_684.1_14463 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_911.1_29469.t1 | 1 | 1 | Cgr1 | 21 | 94 | 6.1e-06 | 26.3 | 1.1e-09 | 8.3e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_911.1_29469.t1 | gi|260831086|ref|XP_002610490.1| | hypothetical protein BRAFLDRAFT_117812 [Branchiostoma floridae] | 2.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_911.1_29469.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_911.1_29469.t1 atggttaatgcgaagggatccgataaagttgctaatgttgatacattgagaaatataccaagaggacgaccaaaatctgg aagagtatggaaaacggtgaaaaagcatcggtactccagtatgaccacaggtaaaccactgaagacatcatggcaagaaa agatgaggaagaaagcccaggctaaatctatcaaggacttcgaaaagcaacttaaggatgacagagccaaagagaaagaa gaagcgaggctgagggcggaagaaaaaagaaaaggcgtgaagagaatgctcgcaaggcagaaattgtacaaacggtaa |
|
Protein
| Protein ID | pfu_aug1.0_911.1_29469.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_911.1_29469.t1 MVNAKGSDKVANVDTLRNIPRGRPKSGRVWKTVKKHRYSSMTTGKPLKTSWQEKMRKKAQAKSIKDFEKQLKDDRAKEKE EARLRAEEKRKGVKRMLARQKLYKR |
|