Gene
| Gene Model ID | pfu_aug1.0_9129.1_09893 |
|---|---|
| Locus | scaffold9129.1 : 1 ... 5670 : + |
| To GenomeBrowser | scaffold9129.1:1..5670 |
| Genes list of scaffold | scaffold9129.1 |
| Synonym | pfu_aug2.0_130.1_00286 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Notch |
| Description | BLAST best hits to NCBI AF000634.1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9129.1_09893.t1 | 4 | 1 | Notch | 14 | 21 | 1.9e-17 | 63.2 | 0.3 | 2200.0 | -1.0 |
| pfu_aug1.0_9129.1_09893.t1 | 4 | 2 | Notch | 76 | 112 | 1.9e-17 | 63.2 | 2.0e-13 | 1.5e-09 | 37.9 |
| pfu_aug1.0_9129.1_09893.t1 | 4 | 3 | Notch | 115 | 149 | 1.9e-17 | 63.2 | 8.8e-14 | 6.5e-10 | 39.1 |
| pfu_aug1.0_9129.1_09893.t1 | 4 | 4 | Notch | 240 | 249 | 1.9e-17 | 63.2 | 0.24 | 1800.0 | -0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9129.1_09893.t1 | gi|2570351|gb|AAB82088.1| | notch homolog [Lytechinus variegatus] | 2.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_9129.1_09893.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9129.1_09893.t1 agggcgtctctggtgatagctgtgaagttgatacagtaaacgaatgtaacaatgccatgtgccaaaatggcgggaactgt atggacatgccaggttactacatgtgtaactgcacgtacgggtggatgggtcggtactgtgaacaaagggaccccaatgt ggtcattccaacaaccccaaaaccaagtacatgtatgaatagttctttctgtccctttgaccaagagccttggatgaact gtgcaaactacatgcaatgtcagagcaaattcatggacaagacttgcgatagagaatgtgcaacagaagattgtttattt gacggttacgactgtactgtaaacattataaagacgtgtccaaacttcacgtgttctctactgtacggcaatggcgtgtg tgacatggagtgcaacataccggaatgtgaaaacgatggcaatgattgtttgtacaagaatgagacaagtatgtattttc ttggtgcaatcattctggacgtcaaaatcgcagatttgagccagttgatagaaaatgtttcaacagaattcctctatctc gcacgaattttccccgcgaatttgacttcgaattatccagccaggattgtacctagaaggcgcggatcgaattcaaaagc tgatgtacccattatcattcctatgaattcctcaatgggcgaaatgttttaccggggatattatgacgtattcaatgaag caggttgtaacgagacgtgctggtcatccattcagagcttcgttaattactttgctgcttctgaaagtatgcagactgac aaccgctatactctacaggcagttacagcatgcatggaggggtattacggagataactgcacgatgaagtgtagtgagaa ttgtaagacaatggacaacgtccctgtatgtgatatgtctgacggcaggtgtacttcaggttgtatcaactccagttacg tgggttccaaatgtaacgccatgtgtagcggaaactgccttagctctgtatgcaacagtgacgggacgtgtaatacgacg ctaaatggacggtgcaaggcaggttatatgggagaaagatgtgaccaaatgaaaatgactaaatgcgtgccgtcggatac catgacgtcactattaagcattattgatacgaagaatataatattgcggctggctgaaattaacattggaatttcccgta gacatttcattttccgtagagcagctattgagctaaagaaaagttaa |
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Protein
| Protein ID | pfu_aug1.0_9129.1_09893.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9129.1_09893.t1 GVSGDSCEVDTVNECNNAMCQNGGNCMDMPGYYMCNCTYGWMGRYCEQRDPNVVIPTTPKPSTCMNSSFCPFDQEPWMNC ANYMQCQSKFMDKTCDRECATEDCLFDGYDCTVNIIKTCPNFTCSLLYGNGVCDMECNIPECENDGNDCLYKNETSMYFL GAIILDVKIADLSQLIENVSTEFLYLARIFPANLTSNYPARIVPRRRGSNSKADVPIIIPMNSSMGEMFYRGYYDVFNEA GCNETCWSSIQSFVNYFAASESMQTDNRYTLQAVTACMEGYYGDNCTMKCSENCKTMDNVPVCDMSDGRCTSGCINSSYV GSKCNAMCSGNCLSSVCNSDGTCNTTLNGRCKAGYMGERCDQMKMTKCVPSDTMTSLLSIIDTKNIILRLAEINIGISRR HFIFRRAAIELKKS |
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