Gene
| Gene Model ID | pfu_aug1.0_9132.1_67996 |
|---|---|
| Locus | scaffold9132.1 : 17286 ... 20025 : + |
| To GenomeBrowser | scaffold9132.1:17286..20025 |
| Genes list of scaffold | scaffold9132.1 |
| Synonym | pfu_aug2.0_812.1_07912 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9132.1_67996.t1 | 1 | 1 | Beta-Casp | 1 | 89 | 5.5e-19 | 68.3 | 1.1e-22 | 8.0e-19 | 67.8 |
| pfu_aug1.0_9132.1_67996.t1 | 1 | 1 | RMMBL | 103 | 138 | 5.0e-07 | 29.4 | 1.2e-10 | 8.7e-07 | 28.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9132.1_67996.t1 | gi|260815130|ref|XP_002602327.1| | hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9132.1_67996.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9132.1_67996.t1 atgagtgtatatcagacctatatcaatgctatgaacgaaaaaataagacggcagatcaacatcagcaatccatttgtctt caaacacatatcaaatctcaaaagtatggaacactttgaggacatagggccctctgtagtactggccagccctggaatga tgcagagtggactttccagagaactgtttgagagctggtgtactgacaagagaaatggatgtattatagccggttactgt gtagagggaacattggcaaagcacatcctgtctgaaccagatgagatcatgaccatggccggacagaagttgcccctgaa gtgttcagtggattatatctccttttctgcacatacagactacaaacagaccagtgaatttatacgcatcctcaaacctt tacatgtggtctgtatctgtgtgtatttgtatggtattaaaaaccattttcatagcacattagtagacttgcattttata catgccaagacccaacgtcacaatattttatgtaatttttactgtgacatcctagcagattcgtga |
|
Protein
| Protein ID | pfu_aug1.0_9132.1_67996.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9132.1_67996.t1 MSVYQTYINAMNEKIRRQINISNPFVFKHISNLKSMEHFEDIGPSVVLASPGMMQSGLSRELFESWCTDKRNGCIIAGYC VEGTLAKHILSEPDEIMTMAGQKLPLKCSVDYISFSAHTDYKQTSEFIRILKPLHVVCICVYLYGIKNHFHSTLVDLHFI HAKTQRHNILCNFYCDILADS |
|