pfu_aug1.0_9141.1_31723: Genome browser

Gene

Gene Model ID	pfu_aug1.0_9141.1_31723
Locus	scaffold9141.1 : 945 ... 10345 : -
To GenomeBrowser	scaffold9141.1:945..10345
Genes list of scaffold	scaffold9141.1
Synonym	pfu_aug2.0_2374.1_15502

Manual annotation

Study field	other
Gene name	myosin heavy chain type II
Description	reciprocal BLASTP best hit to NCBI Acession FJ977805
mRNA evidence

Study field	other
Gene name	myosin heavy chain type II
Description	GenBank: ADD52390.1 myosin heavy chain type II [Lottia gigantea]
mRNA evidence

Hmmer Search for Pfam

query	Total	ID	Target	From	To	Eval	Score	cEval	iEval	Score
pfu_aug1.0_9141.1_31723.t1	2	1	Myosin_head	1	187	0.0	714.8	0.0	0.0	249.1
pfu_aug1.0_9141.1_31723.t1	2	2	Myosin_head	189	563	0.0	714.8	0.0	0.0	464.0
pfu_aug1.0_9141.1_31723.t1	2	1	IQ	580	599	7.4e-06	25.1	1.0e-07	0.00025	20.4
pfu_aug1.0_9141.1_31723.t1	2	2	IQ	609	621	7.4e-06	25.1	0.0066	16.0	5.4

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
pfu_aug1.0_9141.1_31723.t1	gi\|127773\|sp\|P24733.1\|MYS_AEQIR		0.0

Expression profile

(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries	EST count
>Embryonic/Larval stages
mix	1
>Adult tissues
adductorMuscle	1

Transcript

Transcript ID	pfu_aug1.0_9141.1_31723.t1
Definition	-
>pfu_aug1.0_9141.1_31723.t1 atgccacctcatttgtttgctgttgccgacaacgcctaccaaaacatggtacaggacagagagaaccaatcctgtttgat cactggtgaatccggagccggaaaaactgagaacacgaagaaagtcattcagtactttgccttggtcgctgcaggtcagg cgaagaaagaaggagaggaagagaagaaggacgagaaaaagggcacactggaagatcagattgtacaggccaaccctgtg ctggaagcttacggcaacgccaaaaccgtcaggaacaacaactcttcacgttttggaaagttcgtccgtattcattttgg accaactggaaaaatcgccggagctgatattgaaacttacttgctagagaaatctcgcgtcacctaccaacaaactgtag agagaaattaccacattttctaccagcttctcagtaatgctattccatcaattactgaatctctcctttgttcacccgac cccggtttatacagtttcatcaatcagggagcgcttactgtcaatggaattgatgacgtagaagaaatgaaaattaccga tgtaatcaatgccggcgatcttctcaaatgtttattgaaaccaaagattaaagtcggtactgagtttgtcacccagggca gaaataaggatcaggttgtgtactctatctctgctttggccaaatccctgtttgaccgcttgttcaactggcttgtcaag agagtaaacaagacactggacaccatggccaagaggaactactacataggtgtactggacattgccggtttcgaaatttt tgagttcaacagctttgagcagctctgcatcaattacaccaacgagcgtctccagcagttcttcaaccatcacatgttcg tattggagcaagaagaatacaagaaagaaggaattgagtgggaatttattgatttcggcatggacttacaagcttgcatt gagcttattgagaagcctatgggtatcctgtccatccttgaggaagaatgcatgttccccaaagcctcggacaaatccct gaaggagaaactgtacaccaatcacatgggcaagtcagctaactttggcaaacccggaaaagccccacgatccggagtcc ccgcccctgacttcactctcttccactacgccggaagtgtgggatacaacatttccaactggctagagaagaacaaggat cctatcaatgagaacgtagtagccctcctgtctgaatccaaggaacacttggtggcaagtctctttgctgcacctgctga ggctgatacaggtggcgctaagaagaagaagaagtcatctgctttccagactatctcggctgtacacagggaatccttga acaagctgatgaagaacttgtacagtacacatcctcatttcgtacgttgtctgatccccaacgagttgaagcagtccgga ttgatcgatgccgccttggtcatgaaccagctccagtgtaacggtgtacttgagggtatccgtatctgtcgtaagggatt ccctagcagagtactgtatgctgagttcaaacagagatactccatcttggctccaaatgctatcccacaaggctttgctg aaggcaaaattgtagctgagaaggttcttctggctctccagctcgaccccgcagagtacaaacttggatccaccaaagtt ttcttcaaggccggtgtcctgggtatgcttgaggaactacgtgaagagaaactgtccaagatcattaccaacttccaggc ccacatcagaggatatatccagaggaagaactataagaaactgcaagatcagagaactgctctctcaatcatccagaaga acatccgtaaatggttggtcctgaagggatggcagtggtggaaactctacgcaaaggtcaagcccatgttgaacattgcc cgtcaagaagaggaaatgaagaggaagctggaagaaatggagaagatggcagaagacctgaagaaaaccgagaagatgag gaaagaattagaagaacagaatgtcctcctggccagacaaaaggaagatatctacctggaactgcaaacccaacaagacg ctatgtctgatgctgaaacaagaattgaacaacttatcaaccagaaagtagaacacgaggctcaggtatatatttag

Transcript ID

pfu_aug1.0_9141.1_31723.t1

Definition

>pfu_aug1.0_9141.1_31723.t1
atgccacctcatttgtttgctgttgccgacaacgcctaccaaaacatggtacaggacagagagaaccaatcctgtttgat
cactggtgaatccggagccggaaaaactgagaacacgaagaaagtcattcagtactttgccttggtcgctgcaggtcagg
cgaagaaagaaggagaggaagagaagaaggacgagaaaaagggcacactggaagatcagattgtacaggccaaccctgtg
ctggaagcttacggcaacgccaaaaccgtcaggaacaacaactcttcacgttttggaaagttcgtccgtattcattttgg
accaactggaaaaatcgccggagctgatattgaaacttacttgctagagaaatctcgcgtcacctaccaacaaactgtag
agagaaattaccacattttctaccagcttctcagtaatgctattccatcaattactgaatctctcctttgttcacccgac
cccggtttatacagtttcatcaatcagggagcgcttactgtcaatggaattgatgacgtagaagaaatgaaaattaccga
tgtaatcaatgccggcgatcttctcaaatgtttattgaaaccaaagattaaagtcggtactgagtttgtcacccagggca
gaaataaggatcaggttgtgtactctatctctgctttggccaaatccctgtttgaccgcttgttcaactggcttgtcaag
agagtaaacaagacactggacaccatggccaagaggaactactacataggtgtactggacattgccggtttcgaaatttt
tgagttcaacagctttgagcagctctgcatcaattacaccaacgagcgtctccagcagttcttcaaccatcacatgttcg
tattggagcaagaagaatacaagaaagaaggaattgagtgggaatttattgatttcggcatggacttacaagcttgcatt
gagcttattgagaagcctatgggtatcctgtccatccttgaggaagaatgcatgttccccaaagcctcggacaaatccct
gaaggagaaactgtacaccaatcacatgggcaagtcagctaactttggcaaacccggaaaagccccacgatccggagtcc
ccgcccctgacttcactctcttccactacgccggaagtgtgggatacaacatttccaactggctagagaagaacaaggat
cctatcaatgagaacgtagtagccctcctgtctgaatccaaggaacacttggtggcaagtctctttgctgcacctgctga
ggctgatacaggtggcgctaagaagaagaagaagtcatctgctttccagactatctcggctgtacacagggaatccttga
acaagctgatgaagaacttgtacagtacacatcctcatttcgtacgttgtctgatccccaacgagttgaagcagtccgga
ttgatcgatgccgccttggtcatgaaccagctccagtgtaacggtgtacttgagggtatccgtatctgtcgtaagggatt
ccctagcagagtactgtatgctgagttcaaacagagatactccatcttggctccaaatgctatcccacaaggctttgctg
aaggcaaaattgtagctgagaaggttcttctggctctccagctcgaccccgcagagtacaaacttggatccaccaaagtt
ttcttcaaggccggtgtcctgggtatgcttgaggaactacgtgaagagaaactgtccaagatcattaccaacttccaggc
ccacatcagaggatatatccagaggaagaactataagaaactgcaagatcagagaactgctctctcaatcatccagaaga
acatccgtaaatggttggtcctgaagggatggcagtggtggaaactctacgcaaaggtcaagcccatgttgaacattgcc
cgtcaagaagaggaaatgaagaggaagctggaagaaatggagaagatggcagaagacctgaagaaaaccgagaagatgag
gaaagaattagaagaacagaatgtcctcctggccagacaaaaggaagatatctacctggaactgcaaacccaacaagacg
ctatgtctgatgctgaaacaagaattgaacaacttatcaaccagaaagtagaacacgaggctcaggtatatatttag

Protein

Protein ID	pfu_aug1.0_9141.1_31723.t1
Definition	-
>pfu_aug1.0_9141.1_31723.t1 MPPHLFAVADNAYQNMVQDRENQSCLITGESGAGKTENTKKVIQYFALVAAGQAKKEGEEEKKDEKKGTLEDQIVQANPV LEAYGNAKTVRNNNSSRFGKFVRIHFGPTGKIAGADIETYLLEKSRVTYQQTVERNYHIFYQLLSNAIPSITESLLCSPD PGLYSFINQGALTVNGIDDVEEMKITDVINAGDLLKCLLKPKIKVGTEFVTQGRNKDQVVYSISALAKSLFDRLFNWLVK RVNKTLDTMAKRNYYIGVLDIAGFEIFEFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLQACI ELIEKPMGILSILEEECMFPKASDKSLKEKLYTNHMGKSANFGKPGKAPRSGVPAPDFTLFHYAGSVGYNISNWLEKNKD PINENVVALLSESKEHLVASLFAAPAEADTGGAKKKKKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCLIPNELKQSG LIDAALVMNQLQCNGVLEGIRICRKGFPSRVLYAEFKQRYSILAPNAIPQGFAEGKIVAEKVLLALQLDPAEYKLGSTKV FFKAGVLGMLEELREEKLSKIITNFQAHIRGYIQRKNYKKLQDQRTALSIIQKNIRKWLVLKGWQWWKLYAKVKPMLNIA RQEEEMKRKLEEMEKMAEDLKKTEKMRKELEEQNVLLARQKEDIYLELQTQQDAMSDAETRIEQLINQKVEHEAQVYI

Protein ID

pfu_aug1.0_9141.1_31723.t1

Definition

>pfu_aug1.0_9141.1_31723.t1
MPPHLFAVADNAYQNMVQDRENQSCLITGESGAGKTENTKKVIQYFALVAAGQAKKEGEEEKKDEKKGTLEDQIVQANPV
LEAYGNAKTVRNNNSSRFGKFVRIHFGPTGKIAGADIETYLLEKSRVTYQQTVERNYHIFYQLLSNAIPSITESLLCSPD
PGLYSFINQGALTVNGIDDVEEMKITDVINAGDLLKCLLKPKIKVGTEFVTQGRNKDQVVYSISALAKSLFDRLFNWLVK
RVNKTLDTMAKRNYYIGVLDIAGFEIFEFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLQACI
ELIEKPMGILSILEEECMFPKASDKSLKEKLYTNHMGKSANFGKPGKAPRSGVPAPDFTLFHYAGSVGYNISNWLEKNKD
PINENVVALLSESKEHLVASLFAAPAEADTGGAKKKKKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCLIPNELKQSG
LIDAALVMNQLQCNGVLEGIRICRKGFPSRVLYAEFKQRYSILAPNAIPQGFAEGKIVAEKVLLALQLDPAEYKLGSTKV
FFKAGVLGMLEELREEKLSKIITNFQAHIRGYIQRKNYKKLQDQRTALSIIQKNIRKWLVLKGWQWWKLYAKVKPMLNIA
RQEEEMKRKLEEMEKMAEDLKKTEKMRKELEEQNVLLARQKEDIYLELQTQQDAMSDAETRIEQLINQKVEHEAQVYI

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OIST Marine Genomics Unit since 2008