Gene
| Gene Model ID | pfu_aug1.0_9170.1_60560 |
|---|---|
| Locus | scaffold9170.1 : 1 ... 17995 : - |
| To GenomeBrowser | scaffold9170.1:1..17995 |
| Genes list of scaffold | scaffold9170.1 |
| Synonym | pfu_aug2.0_803.1_11195 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9170.1_60560.t1 | 5 | 1 | Smg4_UPF3 | 13 | 87 | 1.0e-25 | 90.7 | 1.5e-23 | 2.2e-19 | 70.1 |
| pfu_aug1.0_9170.1_60560.t1 | 5 | 2 | Smg4_UPF3 | 86 | 146 | 1.0e-25 | 90.7 | 3.0e-11 | 4.4e-07 | 30.0 |
| pfu_aug1.0_9170.1_60560.t1 | 5 | 3 | Smg4_UPF3 | 181 | 206 | 1.0e-25 | 90.7 | 1.0 | 15000.0 | -5.9 |
| pfu_aug1.0_9170.1_60560.t1 | 5 | 4 | Smg4_UPF3 | 219 | 254 | 1.0e-25 | 90.7 | 1.0 | 15000.0 | -7.5 |
| pfu_aug1.0_9170.1_60560.t1 | 5 | 5 | Smg4_UPF3 | 561 | 594 | 1.0e-25 | 90.7 | 0.5 | 7400.0 | -3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9170.1_60560.t1 | gi|321460861|gb|EFX71899.1| | hypothetical protein DAPPUDRAFT_216440 [Daphnia pulex] | 6.00036e-42 |
Transcript
| Transcript ID | pfu_aug1.0_9170.1_60560.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9170.1_60560.t1 atgaagacagataaaaagagagatggttcctctcttccaacgaaggttgtgatgaggcgtcttcctccaagtttgacccc agaggatttgatagagcaaatttctcctctaccaaaccatgacttcttctactttgtcaaagcagatatgagtttgggga gtagtgcattcacaagggcatacataaattttacaaatgcagaagaaatcttcaatttccgggataaatttgatggttat gtctttgttgatggtaaagatcctgattaccagaaatttctcaagactctggaatcccccgaggaagaagaagtgaaatc tctggactcttacctggaagacctggaggccagagagaaagaaatgaaagcaaacaagggatgcccaaagaccaccactc cacttattgagtatttagtgcgtagaagagaggagaaaaaggcaaatatgctgaaaatacaagaagaaaggaaaaagaga gaacaggagaggagaagattaagagatgaagaaaggaggaaaagaagagaaaaggaaagagaacgtgaacaagaaagatt gagagagaaacagagggagaaaaatccagactcaaagagtgagcaacctgtaaaggttttaatgaaaaatcctgacagag aaaaagattctgataaagtttctagaacagagaagtccggagaaaaggatgtcagcaaatcaaaggaaacaaaggaagaa gaaaaaaggaaagagagagaaaaactgaggttctccaaggagaacagagagaagatgaagatagaaaagacgagtaaaca agatagcagtaagagtggacgtgacgttagaggtgatagcgcaaagaagacggaagagaaaggggagagcagtaaagtag ggaggagtgaacgtaaagatacaagcaggaaaactgatacttatggagacaggaagtatgaagaaaagaaaggaagatcc gggaaagattacgacgaacgagagaggggcaaacctgacagagcaaaggacagagagcagggcagacaaagaggggataa agactttgatagaagagataaagactttgatagaagagataaagactacgatagaagagataaagattatgatagaagag aaaaagattatgatagaagagataaagacttcgatagaagagataaagacaacgatagaagagataaagattccgataga agagataaagattatgatagaagagataaagattccgatagaagagataaagactacgatagaagagataaagattccga tagaagagataaagactacgatagaagagataaagattccgatagaagagataaagattatgatagaagagataaagact tcgatagaagagataaagacttcgatagaagagataaagacttcgatagaagagataaaggtgggagggactgggataga agggatgaggactatgactacaaaaatagggagaggcacgataaatacaggggggagaaatctgagacggaaaggtctga tgccagtcgtaagaagtctacagagtcgggggttagtcagagtggaaaagttactgccgagaacaagaaagataaaccag tgaagacaaagagctcaacacctactgtagctaaaggaaaaggagaggttgttcccacagaaaaagttcaggatcagaaa gtggacgaaaaaactaacgatgcaaagacagacattcaaacaatggataaagacaagaagacagacgatgtgaagaaaga cgtgaaagaggacaggagtacaccgtcaccagatctggccatcatgtcaaagtctacagactccatagaggaagggagac caggcagtgctgggagtgaaacatcggaaaaaggacccggagaagaaaaacgcaggaaaaggaggactgatgagaactca tcaaataatgtaacagaaagtgaagttggtgttccaattctggatgtagaaatgagcagcaaagcagaggatgaagtcaa actagatactggtaacctgatctgcagtcaaactgatgaaataaaaagcagtcaaaatgataacatcagaagcagtcaaa ctgatgacctgagtaacaatcaaaatgctgcagatagtgctagccaaatagaaagtatgccaactcaggataatattaca acggatgaaaatcggtgtgcggaagaaataccagtagaaaatactgatgtcaaatctgaaattgatgaaggcactgcagt gtag |
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Protein
| Protein ID | pfu_aug1.0_9170.1_60560.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9170.1_60560.t1 MKTDKKRDGSSLPTKVVMRRLPPSLTPEDLIEQISPLPNHDFFYFVKADMSLGSSAFTRAYINFTNAEEIFNFRDKFDGY VFVDGKDPDYQKFLKTLESPEEEEVKSLDSYLEDLEAREKEMKANKGCPKTTTPLIEYLVRRREEKKANMLKIQEERKKR EQERRRLRDEERRKRREKEREREQERLREKQREKNPDSKSEQPVKVLMKNPDREKDSDKVSRTEKSGEKDVSKSKETKEE EKRKEREKLRFSKENREKMKIEKTSKQDSSKSGRDVRGDSAKKTEEKGESSKVGRSERKDTSRKTDTYGDRKYEEKKGRS GKDYDERERGKPDRAKDREQGRQRGDKDFDRRDKDFDRRDKDYDRRDKDYDRREKDYDRRDKDFDRRDKDNDRRDKDSDR RDKDYDRRDKDSDRRDKDYDRRDKDSDRRDKDYDRRDKDSDRRDKDYDRRDKDFDRRDKDFDRRDKDFDRRDKGGRDWDR RDEDYDYKNRERHDKYRGEKSETERSDASRKKSTESGVSQSGKVTAENKKDKPVKTKSSTPTVAKGKGEVVPTEKVQDQK VDEKTNDAKTDIQTMDKDKKTDDVKKDVKEDRSTPSPDLAIMSKSTDSIEEGRPGSAGSETSEKGPGEEKRRKRRTDENS SNNVTESEVGVPILDVEMSSKAEDEVKLDTGNLICSQTDEIKSSQNDNIRSSQTDDLSNNQNAADSASQIESMPTQDNIT TDENRCAEEIPVENTDVKSEIDEGTAV |
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