Gene
| Gene Model ID | pfu_aug1.0_91710.1_49437 |
|---|---|
| Locus | scaffold91710.1 : 1 ... 1776 : - |
| To GenomeBrowser | scaffold91710.1:1..1776 |
| Genes list of scaffold | scaffold91710.1 |
| Synonym | pfu_aug2.0_240.1_00484 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_91710.1_49437.t1 | 1 | 1 | 7tm_1 | 1 | 102 | 8.6e-17 | 61.1 | 2.2e-20 | 1.1e-16 | 60.8 |
| pfu_aug1.0_91710.1_49437.t1 | 1 | 1 | 7TM_GPCR_Srsx | 5 | 117 | 1.0e-05 | 24.8 | 2.5e-09 | 1.2e-05 | 24.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_91710.1_49437.t1 | gi|260800660|ref|XP_002595215.1| | hypothetical protein BRAFLDRAFT_139336 [Branchiostoma floridae] | 2.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_91710.1_49437.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91710.1_49437.t1 gttatgtttctgatttactcctatatattctacatagtgcggcagcagatgactaagatctttgctttggaagtcatggg aaacagtgaaaacaagaaagtcaaaagtaaattcatgcgcgaggttaaggcggctaaatctttagcagtagtgatcggta tatttgccgtgtgttggttgcctctccacattttaaactctatcaccttaatatgtgacgatccatcatgcgcctatcat tataccattttactggccgccatcttactcagtcatgtcaactccgccatcaatcctttcctgtacgccatcggaaacag tcagttccaaatagcgttcaaacgaatgttctgtggaaagaacgcagtgatgtctaatgatgacgatttcacattcgcta ccaaatcaaaacctaatcaacgcaaaagttcagacagtgtgacgtcaaagcatgacgccgccgtcacttacgaccaaaac gggcgtgataatgccggcttcgacgcatctgacgaaagcatggcggggtcaacgtctgaatataactcggcgaatgaaaa cgccaaaaatggcgagatattctacatacgatag |
|
Protein
| Protein ID | pfu_aug1.0_91710.1_49437.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91710.1_49437.t1 VMFLIYSYIFYIVRQQMTKIFALEVMGNSENKKVKSKFMREVKAAKSLAVVIGIFAVCWLPLHILNSITLICDDPSCAYH YTILLAAILLSHVNSAINPFLYAIGNSQFQIAFKRMFCGKNAVMSNDDDFTFATKSKPNQRKSSDSVTSKHDAAVTYDQN GRDNAGFDASDESMAGSTSEYNSANENAKNGEIFYIR |
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