Gene
| Gene Model ID | pfu_aug1.0_91850.1_71387 |
|---|---|
| Locus | scaffold91850.1 : 1 ... 1374 : + |
| To GenomeBrowser | scaffold91850.1:1..1374 |
| Genes list of scaffold | scaffold91850.1 |
| Synonym | pfu_aug2.0_1574.1_15122 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-a-b |
| Description | Best hit to NP_835455 pancreas transcription factor 1 subunit alpha [Homo sapiens] with 3e-12 by a BLASTP search against NCBI Homo sapiens nr database. The amino acid sequence is almost identical to that of Pfu-orphan-HLH-a |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_91850.1_71387.t1 | 2 | 1 | HLH | 32 | 45 | 6.7e-14 | 51.3 | 0.41 | 6100.0 | -3.0 |
| pfu_aug1.0_91850.1_71387.t1 | 2 | 2 | HLH | 59 | 112 | 6.7e-14 | 51.3 | 4.5e-18 | 6.7e-14 | 51.3 |
Transcript
| Transcript ID | pfu_aug1.0_91850.1_71387.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91850.1_71387.t1 tgtcggtggaaaaagtagatattgagaccaaaattgctgataaggaactatcagatgtagaacctgttgatttgactaat gaatcaaatgaaattaggaaaaagactaatgataaaaagaagaaaagagtaaagaaattcgaaagtttgaatataagtga agaagaaatcgaagaaaggagacggtcagcaaatgatcttgaaaggaggaggatgaaaaaaatgtcggaagccctagacg atctcagaaagtgtattcctcaacatcttcatctgtatcatcgtagaatgtctaaaattcggactttgcgacttgcgacg tcgtacatacgggcacttagtgaaatgttacagaaggacattatgagagaaatggtacagaatgcgtatagaaatattca gtacaatttggtccagtcaccagtggtgtatcccggaataacggtcaatgtggcgccttcccccaccaccggaactccta acttaggacattcctaccacactccccctaggagacagctgaatttctctcagggacagggttattccccctctacacag tacctcccgacaccagatcagaccctaggaggaccacacccagcataccaaacacccatcccgcccagtatagcgttcta ccgtacctccgctcagagacgctggcacacacctagccacaccctttcctcgccgcctgaggaggatgagtaccccagta agccttaccaggacccgtcagtaccggtacagggagatgggaggataccagatcaggagttctcggggaaaagttcctgt cgatatgggactatgtatgtagaaggggtctacccactccccgacagtaaaccaaaggatggataa |
|
Protein
| Protein ID | pfu_aug1.0_91850.1_71387.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_91850.1_71387.t1 SVEKVDIETKIADKELSDVEPVDLTNESNEIRKKTNDKKKKRVKKFESLNISEEEIEERRRSANDLERRRMKKMSEALDD LRKCIPQHLHLYHRRMSKIRTLRLATSYIRALSEMLQKDIMREMVQNAYRNIQYNLVQSPVVYPGITVNVAPSPTTGTPN LGHSYHTPPRRQLNFSQGQGYSPSTQYLPTPDQTLGGPHPAYQTPIPPSIAFYRTSAQRRWHTPSHTLSSPPEEDEYPSK PYQDPSVPVQGDGRIPDQEFSGKSSCRYGTMYVEGVYPLPDSKPKDG |
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