Gene
| Gene Model ID | pfu_aug1.0_92.1_21989 |
|---|---|
| Locus | scaffold92.1 : 61396 ... 66332 : + |
| To GenomeBrowser | scaffold92.1:61396..66332 |
| Genes list of scaffold | scaffold92.1 |
| Synonym | pfu_aug2.0_1281.1_04941 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_92.1_21989.t1 | 2 | 1 | Ldl_recept_b | 61 | 102 | 1.2e-12 | 47.8 | 3.6e-12 | 5.3e-08 | 33.0 |
| pfu_aug1.0_92.1_21989.t1 | 2 | 2 | Ldl_recept_b | 105 | 134 | 1.2e-12 | 47.8 | 3.2e-06 | 0.047 | 14.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_92.1_21989.t1 | gi|348585761|ref|XP_003478639.1| | PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 1B [Cavia porcellus] | 5.0e-15 |
Transcript
| Transcript ID | pfu_aug1.0_92.1_21989.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_92.1_21989.t1 atgcgtccattgtacggaattttacaaaccttacaggaagcaagtactcaatgtcctttaccagatttatgtttttcgtg gcgatcggtcaacaaatatggccggcagcaaggactcttatttgctgacgcattttcgacttctcctctgcgtccgttgt acggaattttacaaaccttacaattcttattttggactgaccacgggacggttgactatataggaaggtcttcaatggat ggtcaagacaaaacaatattgatttcaactaatatcaaaacaccaatagggatagccatcgattatacagggaacttatt atactggagcgactaccaatacgatacaatagagtcatgtgatttctttgggggtaatcggcagaagattctagctgaca atggagccgatataaggagaattttgattaggggaccttccatctattacacggcatggaataaacgaatcgaagattct gattcgctgagaaattttgttgatacatccatcaactaa |
|
Protein
| Protein ID | pfu_aug1.0_92.1_21989.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_92.1_21989.t1 MRPLYGILQTLQEASTQCPLPDLCFSWRSVNKYGRQQGLLFADAFSTSPLRPLYGILQTLQFLFWTDHGTVDYIGRSSMD GQDKTILISTNIKTPIGIAIDYTGNLLYWSDYQYDTIESCDFFGGNRQKILADNGADIRRILIRGPSIYYTAWNKRIEDS DSLRNFVDTSIN |
|