Gene
| Gene Model ID | pfu_aug1.0_923.1_51122 |
|---|---|
| Locus | scaffold923.1 : 19922 ... 25715 : - |
| To GenomeBrowser | scaffold923.1:19922..25715 |
| Genes list of scaffold | scaffold923.1 |
| Synonym | pfu_aug2.0_505.1_17504 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_923.1_51122.t1 | 4 | 1 | zf-H2C2_2 | 777 | 792 | 2.5e-12 | 46.4 | 0.0028 | 14.0 | 6.2 |
| pfu_aug1.0_923.1_51122.t1 | 4 | 1 | zf-C2H2 | 782 | 802 | 8.7e-08 | 32.0 | 5.3e-05 | 0.26 | 11.7 |
| pfu_aug1.0_923.1_51122.t1 | 4 | 2 | zf-H2C2_2 | 797 | 820 | 2.5e-12 | 46.4 | 4.3e-07 | 0.0021 | 18.2 |
| pfu_aug1.0_923.1_51122.t1 | 4 | 2 | zf-C2H2 | 812 | 832 | 8.7e-08 | 32.0 | 8.7e-07 | 0.0043 | 17.3 |
| pfu_aug1.0_923.1_51122.t1 | 4 | 3 | zf-H2C2_2 | 824 | 848 | 2.5e-12 | 46.4 | 9.8e-12 | 4.8e-08 | 32.9 |
| pfu_aug1.0_923.1_51122.t1 | 4 | 3 | zf-C2H2 | 838 | 861 | 8.7e-08 | 32.0 | 8.3e-06 | 0.041 | 14.2 |
| pfu_aug1.0_923.1_51122.t1 | 4 | 4 | zf-H2C2_2 | 853 | 884 | 2.5e-12 | 46.4 | 0.0052 | 26.0 | 5.3 |
| pfu_aug1.0_923.1_51122.t1 | 4 | 4 | zf-C2H2 | 877 | 897 | 8.7e-08 | 32.0 | 0.014 | 69.0 | 4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_923.1_51122.t1 | gi|91080971|ref|XP_974881.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_923.1_51122.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_923.1_51122.t1 atgcttggaacagacagagctagaacacccctccaaccttccaattccacggaaaggagcgagtcaaaattcttcgtcaa cctggacaccgggaacattgagcaacaggcctcgccattggatatgcttgccaacgctgctttggaacgctcagttccat tggctactcgtaacgcatcgtcaaatgataccaacgtaatgccagaaaacgtgaattgcggacctctggcggaaaacagc cgcaaaaatgttgccgaactgtcaaaatcgccacgcaaacatcgagcagtcgggaaagaaaattcaccgaggaaatctac gaagagaaaccaaagtttgccttcgtttgcttcactagcatacacaatggttttgtccaatcagaatccgaacccaaatt cacagagtgatacagtttgcgcgacatcaaatggcgctaaacatacaatgccaccggttccggtcaggaatgctctccct ttggtgcgacgaaaattgccgatcaactcgccgagttttaaggtgtggaacgaactaaaaccttccagcgttatacatcc ttcgtcgccttttctcagaagctgccaaccggaagtattaagatccattcaaccggaagtcaaagccaaaaagcagattt tagctgttacggatccggatgagagaaaagagaatacgaaagagaattcttcagatcttcgtgcagtagaagaggcaggc aatgatacgatatgcgaaaacaaaagagatgctgtcgtattaaagaagaaaagtacatctgagaacgaagcatgttcgga aagtgacactttcgtgctttctgtcaacactgaaagttcaaacagagaggaaaatccgaagacagagcaagtaaaagagt gcttccccttgagatgtccaccagtcggacacagcacgaacagtgttatagagtcagtgttgagttctgagcaaagcgac aatatagtcgctcaaatttcagtgagagaaactttttcgaaagagtttattacacagaacgatgaggtatcggtgttgaa aactgtatctgtacatagcgaacatacaaaaactgctaatagtgctaaaccaaagatttggaatccattgttccatgagc ccacacatacttcgataactcgagtgcctattgagaccgcgagtatgtcaaagtccgaaaaggaagtaagcgaagtagct ccacatttcaaacgtgcgtcatggcaccagccatcagtcgtatataatagctcaacatcgtcgcaaaatatttcccacgt gaaagagcagagtccaaaggaagaaaaatctacgcatgcgcattcaattacttccgttccatcaagtaaatcaagtttgc ataaattttcgattgattccattctatctagggttgagaaacatcatgaggcgaaggatgctaatgaacagaactcttgt ccaattcaaagcacatcgcaaaatgatattgaaatttcgacggaaccggacacaatacaagcttcaaagcgcatgcgctt ggatgaaaaccaaccgtttcaaagacaatccgtaattgttgcgacatcatctgccgttccatcattgataagaacatcga caccagtgctcaagccgacggaaccggaaacaccgcatattgacgataaagaaaatattagtgcttcagcgactccagtt tttctgtggaatatccctactaaagctgcatcgaaacaaccagggccaatcgtttacaggcatccggctttggttgccat ggcgagcacaaacacctccccgaatccgaagatccccgcaaacgttttgctcccgattttacctcaaccatcgcccatcc ggtctttgaaacctaccattggcgaagttcgcaactggaacatccctgtaccaagccaacagatgccgtctccgattatc gtgaagcaggaaccggaaatacgtaatcaaatccaagtttctccggcgatacagatggggccacaacattctcccgcggt acagattacaccacatgttgccgctgctgtgccgatgacgccacagataccttctgcgatgcaggtggcgccacaagttt ctcctgctgttcagatggcgccacctattctaccggctccacctacatctagtactcatatttcttttcaaaaacaacaa caaccgaaggttggagggattcaagtgtatgatgaaagcaattcgggaaatgtgccaatccctttgtcggcggaagtaga actagtgaacggaggattcggtttgaagaacccgtctttccgtccaccaaaaccttcagatatcaccaatgtcagcaaag atccagtaaccggaaatgggaagtacgcatgttcagtatgtaagaaggagtttgcgctgcagcgactgctgaatcgtcat ttgaaatgtcacagcgacaccaaacggtttctgtgtacgttctgcggaaagggctttaacgacacatttgatctaaaacg tcacactcgtatacataccggagtgaagccatacaaatgcagtaaatgtgaacgttcattcacacagcgttgttcactgg aatcacattgtcggaaggttcacaacatagagttcacatacgcttacaaacaacggcggagtaaaatctacgtatgtgaa gaatgcggtcattctacagatgacccggaagtacattatgttcatctccgtgacaaccatccaaacaaccctgccctctc aaagtgtcatgacaaacggcagttcaaattcaacgaaaacaacacggccaacagacaaactttatctttgccgagaacgt ga |
|
Protein
| Protein ID | pfu_aug1.0_923.1_51122.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_923.1_51122.t1 MLGTDRARTPLQPSNSTERSESKFFVNLDTGNIEQQASPLDMLANAALERSVPLATRNASSNDTNVMPENVNCGPLAENS RKNVAELSKSPRKHRAVGKENSPRKSTKRNQSLPSFASLAYTMVLSNQNPNPNSQSDTVCATSNGAKHTMPPVPVRNALP LVRRKLPINSPSFKVWNELKPSSVIHPSSPFLRSCQPEVLRSIQPEVKAKKQILAVTDPDERKENTKENSSDLRAVEEAG NDTICENKRDAVVLKKKSTSENEACSESDTFVLSVNTESSNREENPKTEQVKECFPLRCPPVGHSTNSVIESVLSSEQSD NIVAQISVRETFSKEFITQNDEVSVLKTVSVHSEHTKTANSAKPKIWNPLFHEPTHTSITRVPIETASMSKSEKEVSEVA PHFKRASWHQPSVVYNSSTSSQNISHVKEQSPKEEKSTHAHSITSVPSSKSSLHKFSIDSILSRVEKHHEAKDANEQNSC PIQSTSQNDIEISTEPDTIQASKRMRLDENQPFQRQSVIVATSSAVPSLIRTSTPVLKPTEPETPHIDDKENISASATPV FLWNIPTKAASKQPGPIVYRHPALVAMASTNTSPNPKIPANVLLPILPQPSPIRSLKPTIGEVRNWNIPVPSQQMPSPII VKQEPEIRNQIQVSPAIQMGPQHSPAVQITPHVAAAVPMTPQIPSAMQVAPQVSPAVQMAPPILPAPPTSSTHISFQKQQ QPKVGGIQVYDESNSGNVPIPLSAEVELVNGGFGLKNPSFRPPKPSDITNVSKDPVTGNGKYACSVCKKEFALQRLLNRH LKCHSDTKRFLCTFCGKGFNDTFDLKRHTRIHTGVKPYKCSKCERSFTQRCSLESHCRKVHNIEFTYAYKQRRSKIYVCE ECGHSTDDPEVHYVHLRDNHPNNPALSKCHDKRQFKFNENNTANRQTLSLPRT |
|