Gene
| Gene Model ID | pfu_aug1.0_9262.1_02731 |
|---|---|
| Locus | scaffold9262.1 : 16006 ... 20305 : - |
| To GenomeBrowser | scaffold9262.1:16006..20305 |
| Genes list of scaffold | scaffold9262.1 |
| Synonym | pfu_aug2.0_443.1_10780 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9262.1_02731.t1 | 1 | 1 | zf-C3HC4_3 | 58 | 106 | 1.7e-16 | 59.6 | 1.2e-19 | 2.2e-16 | 59.2 |
| pfu_aug1.0_9262.1_02731.t1 | 1 | 1 | zf-C3HC4_2 | 61 | 99 | 7.2e-09 | 35.5 | 5.7e-12 | 1.1e-08 | 35.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9262.1_02731.t1 | gi|260826087|ref|XP_002607997.1| | hypothetical protein BRAFLDRAFT_120859 [Branchiostoma floridae] | 5.0e-35 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 2 |
| mantlePallium | 2 |
Transcript
| Transcript ID | pfu_aug1.0_9262.1_02731.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9262.1_02731.t1 atgcaaagcttaaaggctcaagtcgaggagatgaagaacatgttacgagtcagctttgatttacaacttgatatccagag agctatcagacaggaagtggctgccgctatgtcaaagcatgttgatggtaattcagcatcagagacggaagccaaatcca agccagtaaacgacacccattgctgtatatgtctagagaagtacgctgactccgtattatatcagtgtggacacatgtgc ttgtgctacagctgtggtcgtcaccttatgtcacgaggatcaaagtgtcccgtctgtcgtgctcccatcaaagacattat ccgtgcttacaagagcacagaagaatcataa |
|
Protein
| Protein ID | pfu_aug1.0_9262.1_02731.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9262.1_02731.t1 MQSLKAQVEEMKNMLRVSFDLQLDIQRAIRQEVAAAMSKHVDGNSASETEAKSKPVNDTHCCICLEKYADSVLYQCGHMC LCYSCGRHLMSRGSKCPVCRAPIKDIIRAYKSTEES |
|