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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_9263.1_09924
Locus scaffold9263.1 : 101976 ... 109048 : +
To GenomeBrowser scaffold9263.1:101976..109048
Genes list of scaffold scaffold9263.1
Synonym pfu_aug2.0_78.1_26809

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_9263.1_09924.t1 1 1 Sugar_tr 52 263 1.26117e-44 152.5 0.0 1.54143e-44 152.2
pfu_aug1.0_9263.1_09924.t1 1 1 MFS_1 124 269 2.5e-07 29.7 1.0e-10 3.8e-07 29.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_9263.1_09924.t1 gi|326912643|ref|XP_003202658.1| 3.00004e-41

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_9263.1_09924.t1
Definition-
>pfu_aug1.0_9263.1_09924.t1
atgatccttttcctcacacatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatga
tgatgatgtcacctctagcataaaaaagtgttttgactttacagggactttagtgtttgccatagcgtcatgtatccttg
gatcctcctttatggtgggttacaacactggggtactcaatgccccagcagaggtcatgaagagtttctacaactgtaca
tattacctcagacatgggagttctcagaccatggacgtctgtttgtcgcagcttaacagctcatcgtccaatcaaacatc
agaatccgagcctggcacgtacatgactcagtcccagatgacatttctatggggaatgactgtggcagcgttcgcatttg
ggggaacgtttggaggcgtgtctgcggggtatttcacgaacaagtttggaaggaggggagccttgctacgtaacaatgta
ctacatttgatagccgcagccatcttggtggcctccagatatgtgaagtcatacgaaatgttaatcgccggaagatttct
ggttggagtgagtgccggtatatgtacaggggcagcacctctgtatctatctgagatagcacctacatcactgaggggat
ttgcagggacgtttaatcagctagcaatcactagtggagtactcgcagcagaagttttgggactgaagtttttacttgga
acatcggactactggcacatattactaggtttaacatgtgcagccattgtatggcaggtattgacattngtcgtggtgtc
cagaaaccccacgttaccttatgatcaatcaaaacaatga

Protein
Protein IDpfu_aug1.0_9263.1_09924.t1
Definition-
>pfu_aug1.0_9263.1_09924.t1
MILFLTHDDDDDDDDDDDDDDDDDDDDDDVTSSIKKCFDFTGTLVFAIASCILGSSFMVGYNTGVLNAPAEVMKSFYNCT
YYLRHGSSQTMDVCLSQLNSSSSNQTSESEPGTYMTQSQMTFLWGMTVAAFAFGGTFGGVSAGYFTNKFGRRGALLRNNV
LHLIAAAILVASRYVKSYEMLIAGRFLVGVSAGICTGAAPLYLSEIAPTSLRGFAGTFNQLAITSGVLAAEVLGLKFLLG
TSDYWHILLGLTCAAIVWQVLTXVVVSRNPTLPYDQSKQ

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