Gene
Gene Model ID | pfu_aug1.0_9305.1_68025 |
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Locus | scaffold9305.1 : 17475 ... 21335 : - |
To GenomeBrowser | scaffold9305.1:17475..21335 |
Genes list of scaffold | scaffold9305.1 |
Synonym | pfu_aug2.0_9.1_29973 |
Manual annotation
Study field | other developmental genes |
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Gene name | vent |
Description | Highest BLAST hit to of Xenopus' Vent-homebox 2 gene 1NP_001081450 |
mRNA evidence |
Study field | other developmental genes |
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Gene name | rent |
Description | The best hit to NM_001168018.1 Saccoglossus kowalevskii vent 1 transcription factor (Vent1), mRNA |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9305.1_68025.t1 | 1 | 1 | Homeobox | 174 | 230 | 4.3e-21 | 74.2 | 2.9e-24 | 8.5e-21 | 73.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_9305.1_68025.t1 | gi|49659002|emb|CAD37941.1| | homeobox protein HOXa1 [Suberites domuncula] | 5.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_9305.1_68025.t1 |
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Definition | - |
>pfu_aug1.0_9305.1_68025.t1 atgacgacaactgcaccaaaagtgaagaaaatggccttttctattgaaaacttggccaggagtagtcatgatgaaccaaa atgtaaagaagctgacaataaaagttattctgccaaaattggaaataacattggaagtgatagaccgccttgcgtcatac cacatggatatggacattattcgccgatcttttacaatggattttattctttaccgtcacagcaatctgtgcccggcgag aatagtttgatttcacctccaccaaatgcgttttccacaaaaaatgtattgaaatctgccgagaaaaagaattccacatc ttataccccaaaacccgaggataaaacaccgcttcgcctgcctttgtcatcaaatgggaaaaggaagagggacgacaatg actctggagtggaaagcccatcccccgacagatctagacatagcagcgaagcaagcttttcttcaaacagttcgtatgca tctgatatagatgatcttcacgacgacacccagaaaaagaagaaagcacgaactgcttttaccacggaacagataaacga actggagaaacgttaccaggcgcaaaagtatctccctgccaacgaaaggagtatcttagctgagagactcggattggccg accaacaggtgaagacttggttccagaaccgccgtatgaaagagaaaagacagcagcgtgacgatgaacatgcgcgcagc tttgccttgccgacaggtggcgttgatgtatctcagctagcagccctggggatgccatgtccccctccctacaacatcca gggtacccctgtacacagtctaccaggattccatcacccccagttcgtatccccaagtacaagccatcctcgtcacgttc cgtatccgatgatgatgccatttcacccagcacttcatggagtcccgtctcacttgtcatctctcagtcaaccgttgcac atcaacacaaggcaagcagaatcaggactttctccgatcacaagtaaatag |
Protein
Protein ID | pfu_aug1.0_9305.1_68025.t1 |
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Definition | - |
>pfu_aug1.0_9305.1_68025.t1 MTTTAPKVKKMAFSIENLARSSHDEPKCKEADNKSYSAKIGNNIGSDRPPCVIPHGYGHYSPIFYNGFYSLPSQQSVPGE NSLISPPPNAFSTKNVLKSAEKKNSTSYTPKPEDKTPLRLPLSSNGKRKRDDNDSGVESPSPDRSRHSSEASFSSNSSYA SDIDDLHDDTQKKKKARTAFTTEQINELEKRYQAQKYLPANERSILAERLGLADQQVKTWFQNRRMKEKRQQRDDEHARS FALPTGGVDVSQLAALGMPCPPPYNIQGTPVHSLPGFHHPQFVSPSTSHPRHVPYPMMMPFHPALHGVPSHLSSLSQPLH INTRQAESGLSPITSK |