Gene
| Gene Model ID | pfu_aug1.0_9305.1_68025 |
|---|---|
| Locus | scaffold9305.1 : 17475 ... 21335 : - |
| To GenomeBrowser | scaffold9305.1:17475..21335 |
| Genes list of scaffold | scaffold9305.1 |
| Synonym | pfu_aug2.0_9.1_29973 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | vent |
| Description | Highest BLAST hit to of Xenopus' Vent-homebox 2 gene 1NP_001081450 |
| mRNA evidence |
| Study field | other developmental genes |
|---|---|
| Gene name | rent |
| Description | The best hit to NM_001168018.1 Saccoglossus kowalevskii vent 1 transcription factor (Vent1), mRNA |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9305.1_68025.t1 | 1 | 1 | Homeobox | 174 | 230 | 4.3e-21 | 74.2 | 2.9e-24 | 8.5e-21 | 73.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9305.1_68025.t1 | gi|49659002|emb|CAD37941.1| | homeobox protein HOXa1 [Suberites domuncula] | 5.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_9305.1_68025.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9305.1_68025.t1 atgacgacaactgcaccaaaagtgaagaaaatggccttttctattgaaaacttggccaggagtagtcatgatgaaccaaa atgtaaagaagctgacaataaaagttattctgccaaaattggaaataacattggaagtgatagaccgccttgcgtcatac cacatggatatggacattattcgccgatcttttacaatggattttattctttaccgtcacagcaatctgtgcccggcgag aatagtttgatttcacctccaccaaatgcgttttccacaaaaaatgtattgaaatctgccgagaaaaagaattccacatc ttataccccaaaacccgaggataaaacaccgcttcgcctgcctttgtcatcaaatgggaaaaggaagagggacgacaatg actctggagtggaaagcccatcccccgacagatctagacatagcagcgaagcaagcttttcttcaaacagttcgtatgca tctgatatagatgatcttcacgacgacacccagaaaaagaagaaagcacgaactgcttttaccacggaacagataaacga actggagaaacgttaccaggcgcaaaagtatctccctgccaacgaaaggagtatcttagctgagagactcggattggccg accaacaggtgaagacttggttccagaaccgccgtatgaaagagaaaagacagcagcgtgacgatgaacatgcgcgcagc tttgccttgccgacaggtggcgttgatgtatctcagctagcagccctggggatgccatgtccccctccctacaacatcca gggtacccctgtacacagtctaccaggattccatcacccccagttcgtatccccaagtacaagccatcctcgtcacgttc cgtatccgatgatgatgccatttcacccagcacttcatggagtcccgtctcacttgtcatctctcagtcaaccgttgcac atcaacacaaggcaagcagaatcaggactttctccgatcacaagtaaatag |
|
Protein
| Protein ID | pfu_aug1.0_9305.1_68025.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9305.1_68025.t1 MTTTAPKVKKMAFSIENLARSSHDEPKCKEADNKSYSAKIGNNIGSDRPPCVIPHGYGHYSPIFYNGFYSLPSQQSVPGE NSLISPPPNAFSTKNVLKSAEKKNSTSYTPKPEDKTPLRLPLSSNGKRKRDDNDSGVESPSPDRSRHSSEASFSSNSSYA SDIDDLHDDTQKKKKARTAFTTEQINELEKRYQAQKYLPANERSILAERLGLADQQVKTWFQNRRMKEKRQQRDDEHARS FALPTGGVDVSQLAALGMPCPPPYNIQGTPVHSLPGFHHPQFVSPSTSHPRHVPYPMMMPFHPALHGVPSHLSSLSQPLH INTRQAESGLSPITSK |
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