Gene
| Gene Model ID | pfu_aug1.0_93226.1_06190 |
|---|---|
| Locus | scaffold93226.1 : 1 ... 1710 : - |
| To GenomeBrowser | scaffold93226.1:1..1710 |
| Genes list of scaffold | scaffold93226.1 |
| Synonym | pfu_aug2.0_234.1_13845 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_93226.1_06190.t1 | 3 | 1 | zf-B_box | 5 | 53 | 8.7e-06 | 25.5 | 6.9e-06 | 0.013 | 15.3 |
| pfu_aug1.0_93226.1_06190.t1 | 3 | 2 | zf-B_box | 70 | 100 | 8.7e-06 | 25.5 | 1.9e-07 | 0.00035 | 20.3 |
| pfu_aug1.0_93226.1_06190.t1 | 3 | 3 | zf-B_box | 444 | 454 | 8.7e-06 | 25.5 | 0.82 | 1500.0 | -0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_93226.1_06190.t1 | gi|260815444|ref|XP_002602483.1| | hypothetical protein BRAFLDRAFT_86868 [Branchiostoma floridae] | 1.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_93226.1_06190.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_93226.1_06190.t1 agaatccaagtcagataagaaaatatgtactgcttgtgcaagggaaaacgaaaccgaaagtgcctgctcctggtgcgtaa actgcagtgaaacactctgtaaagtatgcgatcactcacaccgtaggaacaaattcacatcaagtcatacgctggttgaa cttgtgacatcagaaacatgtgaaatgcaactccatcatgccgatataccttgtacagaacatccggataaaaagattga agcttattgtaccgaccactccgctgtgtgttgcatgacatgcgtaatgctccaacacagaaagtgcgaaaatataagat acgtagaagacgcaagtgaccaaaagaaaaagtctccagaagtacaagaatttacgaaagatttacaaaatctcaagaaa tcgcttgacgaaatggtaaacgacagatctgaaaactcacaacatttcgaaaaggaaattcaaaatataaaagatgaaat cgatagattatttacacgcatatcgagtcacttgaatcgtttgaagtcagataagttatcagagacatcacagattgaaa aagaggtcagacccgagatagaagataaacgtgaaaaaatcaaatgtaaaatgtctacgatagagaatgacctggactta tttcagaccaacatgaagtacaccccacatgcccaattcctacaagctatggaaaaactcttggaacaaaaactgatcct agaaaaatttgtgaaagaccaaaatcaagaaataaaggatgttgagataacatttgaagcaaacaagaaagttttagaaa tagaaaaagatattggtttatttggaaaaataaatctcagaagatctggaaatgatgatttgccggagtccacacataca tatatcgacatgagctcattcgtaccaactctgacttcagtggtcgatatacaaacatctgtgacaggaatagcaatatt agatactggtcatgtggtgctgtcttatcactccgccaataccttacagttacgtgaccaacattgtacgactgtactgt catcattatcactgtcaaaacacccttggggaatcaagatgaccagtgacacagagggcgctgtagctgtaaatggatat ggattggtcatcttcagcatacaaagcaatcagatcacaaagatcaaagaaatcaggacaaacttagatgactttgtgta tcacagagatagatattacatcgtatacgttaagaatatcaccgtatatgacagtagtctcaataaggtgtgtgatatat cagtgaactatcgtgtacactttatggctctccgtgatgacaactcactgtgttatactagtggacaccagatacactgt atcactatggacggcaccccggttttcacgtactcgcatgacatactagagagcccacgaggtatcacagtttatcaatc cagacatatctttgtctgcgactataactctaagaacgtacatcaactgagttataacggaaagcttcaaagaattatat ttgacaatcttccttctagtccgtattgtatcagcatcaatactcggggtgaaagagctgtggtgggatgtaataagaaa atttgtctttacgatctgaaataa |
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Protein
| Protein ID | pfu_aug1.0_93226.1_06190.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_93226.1_06190.t1 ESKSDKKICTACARENETESACSWCVNCSETLCKVCDHSHRRNKFTSSHTLVELVTSETCEMQLHHADIPCTEHPDKKIE AYCTDHSAVCCMTCVMLQHRKCENIRYVEDASDQKKKSPEVQEFTKDLQNLKKSLDEMVNDRSENSQHFEKEIQNIKDEI DRLFTRISSHLNRLKSDKLSETSQIEKEVRPEIEDKREKIKCKMSTIENDLDLFQTNMKYTPHAQFLQAMEKLLEQKLIL EKFVKDQNQEIKDVEITFEANKKVLEIEKDIGLFGKINLRRSGNDDLPESTHTYIDMSSFVPTLTSVVDIQTSVTGIAIL DTGHVVLSYHSANTLQLRDQHCTTVLSSLSLSKHPWGIKMTSDTEGAVAVNGYGLVIFSIQSNQITKIKEIRTNLDDFVY HRDRYYIVYVKNITVYDSSLNKVCDISVNYRVHFMALRDDNSLCYTSGHQIHCITMDGTPVFTYSHDILESPRGITVYQS RHIFVCDYNSKNVHQLSYNGKLQRIIFDNLPSSPYCISINTRGERAVVGCNKKICLYDLK |
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