Gene
| Gene Model ID | pfu_aug1.0_9325.1_02743 |
|---|---|
| Locus | scaffold9325.1 : 1 ... 17151 : + |
| To GenomeBrowser | scaffold9325.1:1..17151 |
| Genes list of scaffold | scaffold9325.1 |
| Synonym | pfu_aug2.0_680.1_01044 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9325.1_02743.t1 | 3 | 1 | Lectin_C | 27 | 139 | 1.1e-26 | 93.5 | 1.8e-16 | 8.8e-13 | 48.8 |
| pfu_aug1.0_9325.1_02743.t1 | 3 | 2 | Lectin_C | 151 | 167 | 1.1e-26 | 93.5 | 0.79 | 3900.0 | -1.5 |
| pfu_aug1.0_9325.1_02743.t1 | 3 | 3 | Lectin_C | 175 | 287 | 1.1e-26 | 93.5 | 4.8e-16 | 2.4e-12 | 47.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9325.1_02743.t1 | gi|81367609|gb|ABB71676.1| | C-type lectin D2 [Azumapecten farreri] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_9325.1_02743.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9325.1_02743.t1 ctggaggctgtcccgatggctggatgagcaccgatacagcatgctacctgttcagtgacttctcagatccttatagcttt aagacgtggaacaatgctaaagtttactgcagtaatgttattcagcaagcgggacctacagctcaccttatatacctgga gacagccaatgaactggcttacatacgaagacagctaccaggagttaatatgacgtcacaaatatggtggataggcatga acgacaaacttcacgagaatgcatgggtgtggggtgacggcacaagtgtaaaccaaagtaatcttcattgggattctgaa ccaaatgattttgcggggagagaggattgtgcatttatcttccaggacggcacatttaatgactttccatgttttttacc tgctgccgtagcatgtgagcttgattctgaagatgccccatgtccagctggctggacaccgtccttggacgaaggttcct ccagttgttattacataggtaacacaactcaggcagatatagccacgtggtacgaggcacgtgataaatgtaaagctctt agcgccccattggatggttatcttctagctgtcaattctgcagacgaaatggcgtatgtttctcagctgatccaacaaaa gacaccaacatctcttggctggtggacaggattgaacgatatgaaaacagaagggcaatgggtctatgatacaccattta ataatcctatagtatccaatgtcataaaatggaacagtgagccaaacaaccgtggcggccatgattactgtgctgtagtg tactatgggggacggtacaatgatgtggattgtggagatacagcggggtatatatgtcagatggacgcttatggatcatc ttcatcaaaaggttcagagacttattcaaagttgcatgcatattcgcctattcttcagatgttctttatccagacattgc tcgccatcaacaacattatgatctga |
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Protein
| Protein ID | pfu_aug1.0_9325.1_02743.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9325.1_02743.t1 GGCPDGWMSTDTACYLFSDFSDPYSFKTWNNAKVYCSNVIQQAGPTAHLIYLETANELAYIRRQLPGVNMTSQIWWIGMN DKLHENAWVWGDGTSVNQSNLHWDSEPNDFAGREDCAFIFQDGTFNDFPCFLPAAVACELDSEDAPCPAGWTPSLDEGSS SCYYIGNTTQADIATWYEARDKCKALSAPLDGYLLAVNSADEMAYVSQLIQQKTPTSLGWWTGLNDMKTEGQWVYDTPFN NPIVSNVIKWNSEPNNRGGHDYCAVVYYGGRYNDVDCGDTAGYICQMDAYGSSSSKGSETYSKLHAYSPILQMFFIQTLL AINNIMI |
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