Gene
| Gene Model ID | pfu_aug1.0_9340.1_02747 |
|---|---|
| Locus | scaffold9340.1 : 40446 ... 44694 : + |
| To GenomeBrowser | scaffold9340.1:40446..44694 |
| Genes list of scaffold | scaffold9340.1 |
| Synonym | pfu_aug2.0_85.1_16877 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9340.1_02747.t1 | 5 | 1 | Cadherin_2 | 27 | 110 | 2.3e-16 | 59.1 | 1.1e-14 | 8.0e-11 | 41.3 |
| pfu_aug1.0_9340.1_02747.t1 | 7 | 1 | Cadherin | 60 | 101 | 0.0 | 302.9 | 7.6e-06 | 0.057 | 13.6 |
| pfu_aug1.0_9340.1_02747.t1 | 7 | 2 | Cadherin | 146 | 240 | 0.0 | 302.9 | 9.8e-15 | 7.3e-11 | 42.1 |
| pfu_aug1.0_9340.1_02747.t1 | 7 | 3 | Cadherin | 254 | 349 | 0.0 | 302.9 | 1.7e-16 | 1.3e-12 | 47.7 |
| pfu_aug1.0_9340.1_02747.t1 | 5 | 2 | Cadherin_2 | 297 | 317 | 2.3e-16 | 59.1 | 0.023 | 170.0 | 1.8 |
| pfu_aug1.0_9340.1_02747.t1 | 7 | 4 | Cadherin | 372 | 459 | 0.0 | 302.9 | 1.7e-14 | 1.2e-10 | 41.4 |
| pfu_aug1.0_9340.1_02747.t1 | 7 | 5 | Cadherin | 474 | 563 | 0.0 | 302.9 | 7.8e-20 | 5.8e-16 | 58.5 |
| pfu_aug1.0_9340.1_02747.t1 | 5 | 3 | Cadherin_2 | 478 | 536 | 2.3e-16 | 59.1 | 0.0097 | 72.0 | 3.0 |
| pfu_aug1.0_9340.1_02747.t1 | 5 | 4 | Cadherin_2 | 578 | 639 | 2.3e-16 | 59.1 | 0.0063 | 47.0 | 3.6 |
| pfu_aug1.0_9340.1_02747.t1 | 7 | 6 | Cadherin | 579 | 668 | 0.0 | 302.9 | 1.3e-18 | 9.3e-15 | 54.6 |
| pfu_aug1.0_9340.1_02747.t1 | 7 | 7 | Cadherin | 696 | 769 | 0.0 | 302.9 | 1.4e-14 | 1.1e-10 | 41.6 |
| pfu_aug1.0_9340.1_02747.t1 | 5 | 5 | Cadherin_2 | 721 | 746 | 2.3e-16 | 59.1 | 0.1 | 740.0 | -0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9340.1_02747.t1 | gi|281337635|gb|EFB13219.1| | hypothetical protein PANDA_019861, partial [Ailuropoda melanoleuca] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_9340.1_02747.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9340.1_02747.t1 atgcttttcccgactacagttttgtccgtcatttgtgtaacctttgtcggaactatttatgcaaatgcacaactaactgc agaattctcagtgaaggaagaatccccaaagtcatttttggtcggaaacatagcgagtgcaagtggacttcagatcagca cctctcccgcggacttcgcaacatttcggtacaatctcctagattcaccggacagcaattttctattcacagtaaacaga aggaatggcaacgtttacacagcgaagaaaatcgacagagaacgggaatgtggattaaaagaaacttgtgccgtggacat gaaagtagctgttttctcaccagcactgtcaagattcgaagttgcttctgttcggattgttatagaggatgtcaatgata acaccccggttttcccgacaaacaaaatagatctgaaaatccctgagtcggctgtagttgggacttcttacaacatagac tctgcaatggacagagattcatcatcattgttcgctgtaaacagttacattctttctcctgataattcgccatttcaact taacgttacacatggaccggaggattccttactgccgtcattgatcctgaaacattccctggacagagaaattaaaagtg actacaatttgacgatcacggcctatgacggaggtagcccaaagaaatcaggttctctgtctgttagtatcaaagtttta gatgaaaatgataacgcgcctgtttttaggaaaagtacatatgacctaagtgtggcagaaaatacgattccaggaacgtc actgatgcgtgtcagtgcaaaggatattgattctggtgacaacgccgatgtgcgctacagattcggaaaaagacaagaga gcttggacaaaatccaaaaatattttgatttggattcaaaaaccggtactatgactttgaaaagagaaattgtgtatcgc agtggtgaaaccattcctatagaagtagatgcaatagacaacggacaaccgccacgtgtcggacagacgacaattcttgt caaggttgctgacgtaggaaataacccgccaaatgtagacattaatttcctatcgtctgcccaaccaaacggagtgacaa tatcagaaacgactagtgtcgggacactggtagcttttgtgacagtagaagaccttgacagcggtgataacggactggtc acttgttctctaaatgacacgacctttgtccttcagaggctggagagtgacggctacttgatagtgacacggtcttctct agatagggaatcaaatgatatgtattatgtcactttagagtgcaaggatcatggaacgccagaaatggtgacattgacct catttatagtcaaggtcaaggacgaaaacgacaataaaccaatattctctaaggacatctattacgctacagtcattgaa aataacagaataagcgaattcgtcacaaaagtttctgcaaaagattttgacatagatgagaacgcaaatataaagtactc tgttcataaagatgcacaaggtcatgttaacattgattctaaaactggcatcatcaaggctatacgaaaatttgacagag aaataataaaccaatacaacttctcaatctatgcaactgatggaggaaaaccagctcagacgggaagcgccacggttgtc atgacaatcggggacttgaatgataacgcaccagctttcaaagtagatactttccaattcttcgtacttgaaaacatggc atctggagtaaaagtaggacgcttgagtgccacggatgctgattttggtgttaatcagaacattttatttaccgccgttg agggatcgctccagaaactaccgtttgcggtttatcaagatggaactgtgcgtacaacagaacaattggacagagaaatg gtgaacagctattctttccttgttagagcatttgatctaggcattccatctttatcaagcacagcaactgtagtcgttcg agtagcagacgagaatgacaaccagccaatgattacttttcccgccaactcaaaccaaacgatcatcgtaccttttccag ctaaccatggcaatgccttactacatattcaagctttcgatgtagatgaaaatggacctaacagttatttgacgtacaca ataatggagggaaatgaaatggatgtctttgagattaacgaaaattctggagcaatttacttgaaacagtttgttgacat tttgaaagacgaaaaattcagactaaaaatttctgtaaaggataatggttacaatcgacatgaagcaatgctggacataa tcgtagttttaaagcggttcaatgaaacagaagcgcaagtttcaatggatgcagacagtcgaaatgcaatcgtcgtgacg gcggtgataactttgatcatcatagggtgcgccactgtgatcactatcgtctgtatcgtaagaagaaatgcccagaaatt aaagacacggaaacaaacggagatcgaatcaaacacacaagagctactaaaacagaaaagcttgtcagtgcctttcaaaa atgtatcttcaaccggaactacaacgacccacaacgaaaagatgaaatcgaaagtaagctttgcagacgacgaggacctg aggaatatggaattgtacaattcaacaggaacgtccatgtttacagacactctgatagaatctcagaaaatggtaacatc ggcagaggaggaaagttactcagatgactctgctgcgcatgacagtggaagaggcggaagttacctggatgtttatcagt gcaatcaagtaaagactttatgtacattcggtcccaaaccagtccaaggcaacggatctgcatttccccattcatcaaca ttacaacacctggagatactgtga |
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Protein
| Protein ID | pfu_aug1.0_9340.1_02747.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9340.1_02747.t1 MLFPTTVLSVICVTFVGTIYANAQLTAEFSVKEESPKSFLVGNIASASGLQISTSPADFATFRYNLLDSPDSNFLFTVNR RNGNVYTAKKIDRERECGLKETCAVDMKVAVFSPALSRFEVASVRIVIEDVNDNTPVFPTNKIDLKIPESAVVGTSYNID SAMDRDSSSLFAVNSYILSPDNSPFQLNVTHGPEDSLLPSLILKHSLDREIKSDYNLTITAYDGGSPKKSGSLSVSIKVL DENDNAPVFRKSTYDLSVAENTIPGTSLMRVSAKDIDSGDNADVRYRFGKRQESLDKIQKYFDLDSKTGTMTLKREIVYR SGETIPIEVDAIDNGQPPRVGQTTILVKVADVGNNPPNVDINFLSSAQPNGVTISETTSVGTLVAFVTVEDLDSGDNGLV TCSLNDTTFVLQRLESDGYLIVTRSSLDRESNDMYYVTLECKDHGTPEMVTLTSFIVKVKDENDNKPIFSKDIYYATVIE NNRISEFVTKVSAKDFDIDENANIKYSVHKDAQGHVNIDSKTGIIKAIRKFDREIINQYNFSIYATDGGKPAQTGSATVV MTIGDLNDNAPAFKVDTFQFFVLENMASGVKVGRLSATDADFGVNQNILFTAVEGSLQKLPFAVYQDGTVRTTEQLDREM VNSYSFLVRAFDLGIPSLSSTATVVVRVADENDNQPMITFPANSNQTIIVPFPANHGNALLHIQAFDVDENGPNSYLTYT IMEGNEMDVFEINENSGAIYLKQFVDILKDEKFRLKISVKDNGYNRHEAMLDIIVVLKRFNETEAQVSMDADSRNAIVVT AVITLIIIGCATVITIVCIVRRNAQKLKTRKQTEIESNTQELLKQKSLSVPFKNVSSTGTTTTHNEKMKSKVSFADDEDL RNMELYNSTGTSMFTDTLIESQKMVTSAEEESYSDDSAAHDSGRGGSYLDVYQCNQVKTLCTFGPKPVQGNGSAFPHSST LQHLEIL |
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