Gene
| Gene Model ID | pfu_aug1.0_9376.1_31762 |
|---|---|
| Locus | scaffold9376.1 : 8785 ... 17724 : - |
| To GenomeBrowser | scaffold9376.1:8785..17724 |
| Genes list of scaffold | scaffold9376.1 |
| Synonym | pfu_aug2.0_13993.1_13166 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9376.1_31762.t1 | 5 | 1 | WD40 | 5 | 20 | 4.4e-09 | 35.8 | 7.6e-07 | 0.011 | 15.5 |
| pfu_aug1.0_9376.1_31762.t1 | 5 | 2 | WD40 | 35 | 48 | 4.4e-09 | 35.8 | 0.11 | 1600.0 | -0.8 |
| pfu_aug1.0_9376.1_31762.t1 | 5 | 3 | WD40 | 82 | 107 | 4.4e-09 | 35.8 | 0.013 | 190.0 | 2.1 |
| pfu_aug1.0_9376.1_31762.t1 | 5 | 4 | WD40 | 192 | 208 | 4.4e-09 | 35.8 | 0.072 | 1100.0 | -0.3 |
| pfu_aug1.0_9376.1_31762.t1 | 5 | 5 | WD40 | 244 | 261 | 4.4e-09 | 35.8 | 2.2e-05 | 0.32 | 10.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9376.1_31762.t1 | gi|197127782|gb|ACH44280.1| | putative eukaryotic translation initiation factor 3 subunit 2 beta 36 kDa variant 1 [Taeniopygia guttata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9376.1_31762.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9376.1_31762.t1 taaaaggggacacaaccaaagtgttaacagggtcagctgataactcatgtagagtgtgggattgtgaaacaggtaagcag ttgacattactagagacagcgactgcagtaaggacatgtggcttctccttcagcgggcggtatctgatgtacaccacaga taaaactatgggaaggccatgtgaagttcatatatttgatgtcaataaccttagatcaggtgaaccagaaatcgttattc ctatatcttcatccaaaatcacagcagcagtgtggggtccttatgaagaatatatcatagctggacatgaaaatggagaa atagcacattatgatgtcaagatatgtctttatgatgtcaaagaatgtcttcatgatgtcaaagtatatcttcctgatgt caagaaatgtcttcatgatgtcaaagtatgtcttcatgatgtcaagatatgtcttcatgatgtcaaagtatgtcttcatg atatcaagatatgtcttcatgatgtcaaagtatgtcttcatgatgtcaagttgtttgacaccaatactctacgtcatatg aagacatacaagacagaacgtcctgtcaactctgcgtccctgtctccaatcatggaccacgtggtattaggaggaggtca ggaggccatggatgtcaccaccacctcaacaaggataggaaaatttgacgccagattttttaaccttgtctttgaggaag agtttggtagagttaaaggtcattttggtcccataaacagcacagcatttcatccagatggtaaaaggtaa |
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Protein
| Protein ID | pfu_aug1.0_9376.1_31762.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9376.1_31762.t1 KGDTTKVLTGSADNSCRVWDCETGKQLTLLETATAVRTCGFSFSGRYLMYTTDKTMGRPCEVHIFDVNNLRSGEPEIVIP ISSSKITAAVWGPYEEYIIAGHENGEIAHYDVKICLYDVKECLHDVKVYLPDVKKCLHDVKVCLHDVKICLHDVKVCLHD IKICLHDVKVCLHDVKLFDTNTLRHMKTYKTERPVNSASLSPIMDHVVLGGGQEAMDVTTTSTRIGKFDARFFNLVFEEE FGRVKGHFGPINSTAFHPDGKR |
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