Gene
Gene Model ID | pfu_aug1.0_938.1_58308 |
---|---|
Locus | scaffold938.1 : 27309 ... 45645 : - |
To GenomeBrowser | scaffold938.1:27309..45645 |
Genes list of scaffold | scaffold938.1 |
Synonym | pfu_aug2.0_970.1_01286 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_938.1_58308.t1 | 3 | 1 | WD40 | 66 | 92 | 1.2e-06 | 28.1 | 4.7e-06 | 0.035 | 14.0 |
pfu_aug1.0_938.1_58308.t1 | 3 | 2 | WD40 | 103 | 123 | 1.2e-06 | 28.1 | 0.58 | 4300.0 | -2.2 |
pfu_aug1.0_938.1_58308.t1 | 1 | 1 | Med16 | 111 | 819 | 0.0 | 248.9 | 0.0 | 0.0 | 248.4 |
pfu_aug1.0_938.1_58308.t1 | 3 | 3 | WD40 | 352 | 370 | 1.2e-06 | 28.1 | 4.5e-05 | 0.33 | 10.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_938.1_58308.t1 | gi|224087665|ref|XP_002193752.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Taeniopygia guttata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
adductorMuscle | 1 |
maleGonad | 2 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_938.1_58308.t1 |
---|---|
Definition | - |
>pfu_aug1.0_938.1_58308.t1 atgcaaacatcgcaacttttgacgtcatttcaagtttactgtgacgtcatagatatgttacgacatcaaacctcatctca agcacaagtacctttaaataacatcgtacgcgtaggagagttgagtgtacagtatgaggtcggcctgtttgaccttgaca gaccttgggaatggtaccaggtcatggtcagttctagtgttatcacgtgtctggagtgggacaagatgggaaatcgtcta ctgatagctgatgctgacggaaaatgtcagatatggcaaatgcaggactttctgctgaacagatggacatgtcatagctc gtcaacattagaggatgaagaaattttggctgtagcttggttccataatggtgtacaggtcacttttaatccagagaaat gtggaacaattctatacaatgacaagttccaaaggggccagtttgtgccatctctcacaaaatttggtggtaagccagtt gatggttggattgctgttacagctagtgggctggtatgtgccggcgtagtaagcacccaggagccgtacatagaagtggc caatcagacgctgtcacagtcctatcaacggctaagtctggtgtcaatcgctcatactggtaaaggggagatggtggtag ccgctagtgatggtcaaatctccacggcgattcattgttacaaagtgtcactcagcttgcagaatggtgtattacagata agttgtaagccatcagcaagtttcttcgccaaaagtcaggtggactatgcagcaaatgacagtcaacgtatggggataac tcagctttacttcctaaaccaggagagtagcgagactgtgctggtcagctgtggtagccatggttacagctctctggaga tctggcagctccttgaccataacatgccggtcaatagtaaattatgtcagtatggccaggtgccggacactgtatatcac atgccaaaatggatgcataaggcaaccattcaacactcatcatacctgacatccatagcaacccccagacttcctctgac caagaccatgacagattctggattctccccatacatagcgacagcgtacagagacggaactttgaagctgatccatcgtc acacctatcaagttatgcagtctggggtcatggatacgttttataatcctaatgttggtgcaagtcccacaaagaaacca aggaaatctgtcaacatatcaaacctcatccaaaccatgagtggctgtggtttggtagcagtgcatgatgggaaaatttc agttttgaaagtgtttaatgtaaaggatggtggaatgatgatgtcagcatcgtatgtttgcttgttactggagtacatac ttgttgctggtcaagactggtgggatattttgctcgctgtcaaaccaggaaatattgaaagtatctgtatgaagttactg gacaatttctacaaacagccggcccccatgcaagacttaattcttatgcgactttcagctttgagagttgccatgtacag tatgagcacatcaactcaccagaaagccgcagactatcatacaagacttgtgttacaggccattcactcagtattcagag cacttctcagaccaaaggctgtcaccacacaagataagagtccagcagagaaagtgacaatgttatgtcagaagtctaca gacggtgatctggagaatctgttggtcaatctggaggtagaggaattcctcatagaccccaggaggaaagacaagaaagg ctcgggggaagcccttcagtccctccagccactgatacaatgggtagcagatttttcactccatctcctggcatccatac ctctctaccagtcctactcaaccttccctggagcctcacttctcagcaactcatcggttctcaacacactgcgagaactt ctcgtcatcatcaggatctggggcgtcattagtcctgcttccttaccggtatttgcaactacatcaaacgtggactgtct agctcacctgtttaaggtgatgactaaagcttggctatgctccagtaacaaggaggggaataaactagaatatgatgaag cattgttagatgagtgctgtgtactgccgagcaaggttctagttccgtctgtgagtcaggacttccgattaaacagtact ggctactcagtatttacccagcatacaccagtttcatttgtgttcggagagcagcctgaatatctgtaccatcggaagaa aagtaagatgcattatgtgtcagatgtattaatagaaaacggacagcatcatgatattgtacgacagatccacctagggg cacagctgaaggagggggttaggcagtgtgtaaggtgtggggggttttccctccttcagactgtagcctcctcccccatc attaaggcctgggaacaccgctggcagaaacactgtctatgcggtgctcactggaaactctatactcaacaatcttga |
Protein
Protein ID | pfu_aug1.0_938.1_58308.t1 |
---|---|
Definition | - |
>pfu_aug1.0_938.1_58308.t1 MQTSQLLTSFQVYCDVIDMLRHQTSSQAQVPLNNIVRVGELSVQYEVGLFDLDRPWEWYQVMVSSSVITCLEWDKMGNRL LIADADGKCQIWQMQDFLLNRWTCHSSSTLEDEEILAVAWFHNGVQVTFNPEKCGTILYNDKFQRGQFVPSLTKFGGKPV DGWIAVTASGLVCAGVVSTQEPYIEVANQTLSQSYQRLSLVSIAHTGKGEMVVAASDGQISTAIHCYKVSLSLQNGVLQI SCKPSASFFAKSQVDYAANDSQRMGITQLYFLNQESSETVLVSCGSHGYSSLEIWQLLDHNMPVNSKLCQYGQVPDTVYH MPKWMHKATIQHSSYLTSIATPRLPLTKTMTDSGFSPYIATAYRDGTLKLIHRHTYQVMQSGVMDTFYNPNVGASPTKKP RKSVNISNLIQTMSGCGLVAVHDGKISVLKVFNVKDGGMMMSASYVCLLLEYILVAGQDWWDILLAVKPGNIESICMKLL DNFYKQPAPMQDLILMRLSALRVAMYSMSTSTHQKAADYHTRLVLQAIHSVFRALLRPKAVTTQDKSPAEKVTMLCQKST DGDLENLLVNLEVEEFLIDPRRKDKKGSGEALQSLQPLIQWVADFSLHLLASIPLYQSYSTFPGASLLSNSSVLNTLREL LVIIRIWGVISPASLPVFATTSNVDCLAHLFKVMTKAWLCSSNKEGNKLEYDEALLDECCVLPSKVLVPSVSQDFRLNST GYSVFTQHTPVSFVFGEQPEYLYHRKKSKMHYVSDVLIENGQHHDIVRQIHLGAQLKEGVRQCVRCGGFSLLQTVASSPI IKAWEHRWQKHCLCGAHWKLYTQQS |