Gene
| Gene Model ID | pfu_aug1.0_938.1_58308 |
|---|---|
| Locus | scaffold938.1 : 27309 ... 45645 : - |
| To GenomeBrowser | scaffold938.1:27309..45645 |
| Genes list of scaffold | scaffold938.1 |
| Synonym | pfu_aug2.0_970.1_01286 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_938.1_58308.t1 | 3 | 1 | WD40 | 66 | 92 | 1.2e-06 | 28.1 | 4.7e-06 | 0.035 | 14.0 |
| pfu_aug1.0_938.1_58308.t1 | 3 | 2 | WD40 | 103 | 123 | 1.2e-06 | 28.1 | 0.58 | 4300.0 | -2.2 |
| pfu_aug1.0_938.1_58308.t1 | 1 | 1 | Med16 | 111 | 819 | 0.0 | 248.9 | 0.0 | 0.0 | 248.4 |
| pfu_aug1.0_938.1_58308.t1 | 3 | 3 | WD40 | 352 | 370 | 1.2e-06 | 28.1 | 4.5e-05 | 0.33 | 10.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_938.1_58308.t1 | gi|224087665|ref|XP_002193752.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Taeniopygia guttata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 2 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_938.1_58308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_938.1_58308.t1 atgcaaacatcgcaacttttgacgtcatttcaagtttactgtgacgtcatagatatgttacgacatcaaacctcatctca agcacaagtacctttaaataacatcgtacgcgtaggagagttgagtgtacagtatgaggtcggcctgtttgaccttgaca gaccttgggaatggtaccaggtcatggtcagttctagtgttatcacgtgtctggagtgggacaagatgggaaatcgtcta ctgatagctgatgctgacggaaaatgtcagatatggcaaatgcaggactttctgctgaacagatggacatgtcatagctc gtcaacattagaggatgaagaaattttggctgtagcttggttccataatggtgtacaggtcacttttaatccagagaaat gtggaacaattctatacaatgacaagttccaaaggggccagtttgtgccatctctcacaaaatttggtggtaagccagtt gatggttggattgctgttacagctagtgggctggtatgtgccggcgtagtaagcacccaggagccgtacatagaagtggc caatcagacgctgtcacagtcctatcaacggctaagtctggtgtcaatcgctcatactggtaaaggggagatggtggtag ccgctagtgatggtcaaatctccacggcgattcattgttacaaagtgtcactcagcttgcagaatggtgtattacagata agttgtaagccatcagcaagtttcttcgccaaaagtcaggtggactatgcagcaaatgacagtcaacgtatggggataac tcagctttacttcctaaaccaggagagtagcgagactgtgctggtcagctgtggtagccatggttacagctctctggaga tctggcagctccttgaccataacatgccggtcaatagtaaattatgtcagtatggccaggtgccggacactgtatatcac atgccaaaatggatgcataaggcaaccattcaacactcatcatacctgacatccatagcaacccccagacttcctctgac caagaccatgacagattctggattctccccatacatagcgacagcgtacagagacggaactttgaagctgatccatcgtc acacctatcaagttatgcagtctggggtcatggatacgttttataatcctaatgttggtgcaagtcccacaaagaaacca aggaaatctgtcaacatatcaaacctcatccaaaccatgagtggctgtggtttggtagcagtgcatgatgggaaaatttc agttttgaaagtgtttaatgtaaaggatggtggaatgatgatgtcagcatcgtatgtttgcttgttactggagtacatac ttgttgctggtcaagactggtgggatattttgctcgctgtcaaaccaggaaatattgaaagtatctgtatgaagttactg gacaatttctacaaacagccggcccccatgcaagacttaattcttatgcgactttcagctttgagagttgccatgtacag tatgagcacatcaactcaccagaaagccgcagactatcatacaagacttgtgttacaggccattcactcagtattcagag cacttctcagaccaaaggctgtcaccacacaagataagagtccagcagagaaagtgacaatgttatgtcagaagtctaca gacggtgatctggagaatctgttggtcaatctggaggtagaggaattcctcatagaccccaggaggaaagacaagaaagg ctcgggggaagcccttcagtccctccagccactgatacaatgggtagcagatttttcactccatctcctggcatccatac ctctctaccagtcctactcaaccttccctggagcctcacttctcagcaactcatcggttctcaacacactgcgagaactt ctcgtcatcatcaggatctggggcgtcattagtcctgcttccttaccggtatttgcaactacatcaaacgtggactgtct agctcacctgtttaaggtgatgactaaagcttggctatgctccagtaacaaggaggggaataaactagaatatgatgaag cattgttagatgagtgctgtgtactgccgagcaaggttctagttccgtctgtgagtcaggacttccgattaaacagtact ggctactcagtatttacccagcatacaccagtttcatttgtgttcggagagcagcctgaatatctgtaccatcggaagaa aagtaagatgcattatgtgtcagatgtattaatagaaaacggacagcatcatgatattgtacgacagatccacctagggg cacagctgaaggagggggttaggcagtgtgtaaggtgtggggggttttccctccttcagactgtagcctcctcccccatc attaaggcctgggaacaccgctggcagaaacactgtctatgcggtgctcactggaaactctatactcaacaatcttga |
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Protein
| Protein ID | pfu_aug1.0_938.1_58308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_938.1_58308.t1 MQTSQLLTSFQVYCDVIDMLRHQTSSQAQVPLNNIVRVGELSVQYEVGLFDLDRPWEWYQVMVSSSVITCLEWDKMGNRL LIADADGKCQIWQMQDFLLNRWTCHSSSTLEDEEILAVAWFHNGVQVTFNPEKCGTILYNDKFQRGQFVPSLTKFGGKPV DGWIAVTASGLVCAGVVSTQEPYIEVANQTLSQSYQRLSLVSIAHTGKGEMVVAASDGQISTAIHCYKVSLSLQNGVLQI SCKPSASFFAKSQVDYAANDSQRMGITQLYFLNQESSETVLVSCGSHGYSSLEIWQLLDHNMPVNSKLCQYGQVPDTVYH MPKWMHKATIQHSSYLTSIATPRLPLTKTMTDSGFSPYIATAYRDGTLKLIHRHTYQVMQSGVMDTFYNPNVGASPTKKP RKSVNISNLIQTMSGCGLVAVHDGKISVLKVFNVKDGGMMMSASYVCLLLEYILVAGQDWWDILLAVKPGNIESICMKLL DNFYKQPAPMQDLILMRLSALRVAMYSMSTSTHQKAADYHTRLVLQAIHSVFRALLRPKAVTTQDKSPAEKVTMLCQKST DGDLENLLVNLEVEEFLIDPRRKDKKGSGEALQSLQPLIQWVADFSLHLLASIPLYQSYSTFPGASLLSNSSVLNTLREL LVIIRIWGVISPASLPVFATTSNVDCLAHLFKVMTKAWLCSSNKEGNKLEYDEALLDECCVLPSKVLVPSVSQDFRLNST GYSVFTQHTPVSFVFGEQPEYLYHRKKSKMHYVSDVLIENGQHHDIVRQIHLGAQLKEGVRQCVRCGGFSLLQTVASSPI IKAWEHRWQKHCLCGAHWKLYTQQS |
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