Gene
| Gene Model ID | pfu_aug1.0_938.1_58309 |
|---|---|
| Locus | scaffold938.1 : 47186 ... 52836 : + |
| To GenomeBrowser | scaffold938.1:47186..52836 |
| Genes list of scaffold | scaffold938.1 |
| Synonym | pfu_aug2.0_970.1_01285 |
Manual annotation
| Study field | signal molecules |
|---|---|
| Gene name | PVF1-like |
| Description | NCBI BLASTP hit to VEGF183 protein, putative [Ixodes scapularis]. NJ tree analysis among Mus musuculus, Drosophila melanogaster, and Pinctada fucata show that this gene may be orthologous to Drosophila PVF1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_938.1_58309.t1 | 1 | 1 | PDGF | 7 | 89 | 2.2e-09 | 37.2 | 3.0e-13 | 2.2e-09 | 37.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_938.1_58309.t1 | gi|241706655|ref|XP_002411998.1| | VEGF183 protein, putative [Ixodes scapularis] | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug1.0_938.1_58309.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_938.1_58309.t1 atggcacattatgatgcctgtacactccgaccaacaacatacgagattcccaagaatgaggatcccaaactgtcttactt tcccccgtgtacgagggttcccatgtgtgggggatgtagtccggggacggtgcaggaatgtacacctgtatcaattgagc agcgaccaatgatggttatggtgacaagaattccggcgccaggttctccggatttcatcttcgaatcatttgaagtcatc aacatacctgtacacacagcgtgtgagcctcgttgtcgtgtaacccaggaacattgtaatgaatatcaggattaccttcc ccatgattgtcgctgtgtctgtcgggagagattcccatgtccgtccgaccgtcatagatgggacgaagcgacgtgctcat gcacatgctcagaggacagtggaaattgtccaggattttcaatattcaacccaatgcgctgcagatgtgagttgagatcc gggatatcaatatacgaggatcgccaaggggtgtcagtggaacttactgacgaggaactacaagacgtgtacaacgttgg acgtgcaccgacacccagcaccactaccacaacaactactaccctggccccgcttgtgttccaccgcccgagcacccccg ttgtgggcaccccctgccagccctcgcctggttctcttccttgcttgttaggcatgagatacgtatggacaaggactggt tcatgttcatgtgggataccttcacagcccactcaacgacccaccctggagtgtacaccccctcagccttgcttgatgtt catgagcccaagactgaatgacaggggcgaatgtttgtgtcagcttactagaggacgacgcagtgcgcttatacgacaac tgatgaacaagaatcacaaatag |
|
Protein
| Protein ID | pfu_aug1.0_938.1_58309.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_938.1_58309.t1 MAHYDACTLRPTTYEIPKNEDPKLSYFPPCTRVPMCGGCSPGTVQECTPVSIEQRPMMVMVTRIPAPGSPDFIFESFEVI NIPVHTACEPRCRVTQEHCNEYQDYLPHDCRCVCRERFPCPSDRHRWDEATCSCTCSEDSGNCPGFSIFNPMRCRCELRS GISIYEDRQGVSVELTDEELQDVYNVGRAPTPSTTTTTTTTLAPLVFHRPSTPVVGTPCQPSPGSLPCLLGMRYVWTRTG SCSCGIPSQPTQRPTLECTPPQPCLMFMSPRLNDRGECLCQLTRGRRSALIRQLMNKNHK |
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