Gene
| Gene Model ID | pfu_aug1.0_9494.1_24568 |
|---|---|
| Locus | scaffold9494.1 : 3443 ... 24765 : - |
| To GenomeBrowser | scaffold9494.1:3443..24765 |
| Genes list of scaffold | scaffold9494.1 |
| Synonym | pfu_aug2.0_550.1_00879 |
Manual annotation
| Study field | 20 basic cell biology |
|---|---|
| Gene name | elongation factor 1-alpha |
| Description | Best hit to Crassostrea gigas EF1-alpha mRNA for elongation factor 1 alpha, complete cds (AB122066.1) by BLASTN search against NCBI nt database. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9494.1_24568.t1 | 1 | 1 | GTP_EFTU | 5 | 237 | 0.0 | 189.7 | 0.0 | 0.0 | 189.2 |
| pfu_aug1.0_9494.1_24568.t1 | 1 | 1 | GTP_EFTU_D2 | 260 | 326 | 1.0e-17 | 64.0 | 5.4e-21 | 1.2e-17 | 63.8 |
| pfu_aug1.0_9494.1_24568.t1 | 1 | 1 | GTP_EFTU_D3 | 334 | 441 | 8.7e-37 | 125.2 | 1.1e-39 | 2.4e-36 | 123.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9494.1_24568.t1 | gi|50980344|gb|AAT91089.1| | elongation factor 1-alpha [Pimephales promelas] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 6 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 2 |
| mantle | 4 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_9494.1_24568.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9494.1_24568.t1 atgggaaaagaaaagacccacatcaacatcgtcgtcattggtcatgtcgactccggtaaatccaccaccactggtcactt gatctacaagtgtggaggtattgacaagagaaccatcgagaagtttgagaaggaggctgctgagatgggaaaaggttcct tcaaatatgcctgggtattggacaaactgaaggcagagcgtgaacgtggtatcactattgatattgccctgtggaagttt gaaacaaccaaatactacattaccatcattgatgcccctggccacagagatttcatcaagaacatgatcacaggtacatc tcaggctgactgcgcagtgttgattgtggctgccggtgttggagaatttgaggctggtatttctaaaaacggacagactc gtgaacatgccttgttggccttcacattgggagtaaaacagctgatcgttggtgtcaacaagatggacagcactgaacca gcttattctgaggcacgttttactgaaattgaaaaagaagtcagcgcttatgtcaaaaagattggttataatcctaaaaa tgtggcatttgtaccaatttctggatggcatggagacaacatgcttgaggaatctgataatatgaaatggtttaaaggat ggtccattgagagaaaggagggaaatgccagtggtaaaacactgtttaatgctctggatgccattttacctcctcagaga ccaactgagaagcctcttcgtctgcctctacaggacgtatacaaaataggaggtattggaacagtgccagttggtagagt ggagactggtatacttaaaccaggaatggttgttacctttgctccagtcaatgtcactactgaagtaaaatctgtggaga tgcaccacgagtctttaccagaggctttacctggagataatgttggttttaacgtgaaaaacgtatctgtcaaagatgta aagagaggaaatgttgctggagacagcaaaagcgatccacccaagggagcaaagacattctatgcccaggtcattattct gaaccaccctggtgaaattcgcagtggttacgcacctgtcctcgattgtcacactgcccacattgcctgcaaatttactg aaatcaaggaaaaggtggaccgtcgtagcggtaaaaaacttgaagacaaccccaaatttgtcaaatctggtgatgctgcc atggttgacatgaccccccagaaaccaatgtgtgtagaagccttttcagaatacgccccacttggacgttttgctgtccg tgacatgagacagaccgtggctgttggagtcataaaaagcgttgagaaagcagaggccactggtggtaaggtaaccaaag cagcccagaaagctcagaagaagtga |
|
Protein
| Protein ID | pfu_aug1.0_9494.1_24568.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9494.1_24568.t1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP AYSEARFTEIEKEVSAYVKKIGYNPKNVAFVPISGWHGDNMLEESDNMKWFKGWSIERKEGNASGKTLFNALDAILPPQR PTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPVNVTTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKDV KRGNVAGDSKSDPPKGAKTFYAQVIILNHPGEIRSGYAPVLDCHTAHIACKFTEIKEKVDRRSGKKLEDNPKFVKSGDAA MVDMTPQKPMCVEAFSEYAPLGRFAVRDMRQTVAVGVIKSVEKAEATGGKVTKAAQKAQKK |
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