Gene
| Gene Model ID | pfu_aug1.0_9494.1_24570 |
|---|---|
| Locus | scaffold9494.1 : 33426 ... 41053 : + |
| To GenomeBrowser | scaffold9494.1:33426..41053 |
| Genes list of scaffold | scaffold9494.1 |
| Synonym | pfu_aug2.0_550.1_00878 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9494.1_24570.t1 | 1 | 1 | Ribosomal_S14 | 88 | 140 | 1.8e-18 | 65.6 | 3.1e-22 | 4.6e-18 | 64.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9494.1_24570.t1 | gi|197260900|gb|ACH56945.1| | mitochondrial 28S ribosomal protein S14 [Simulium vittatum] | 3.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9494.1_24570.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9494.1_24570.t1 atggcggcgcccttgacagtttgtggaagattgattaattttgttcgtcccacttgcagtacatctgcacagtttttaaa aagcaatgaacacaagggacataatcttgagcagacacgtaccaaatatgtgagctggctgatgcataaagacaatagga ggaggaaaacctttgaggaacatgctcctgaaagacttcggatcaatgccattaggaaaaataccattttacccaaagaa ataagggaaatggcagataaagaaatcaaagaattacccctggacagttctattgtacgcttacataaacgatgcattct aacatcacgaccaaggggaaacgtgaaaaagtggcgcattagtcgcattatgttcagaagtctggcagattataacaaat tacctggagttactcgtgctgtgtggtag |
|
Protein
| Protein ID | pfu_aug1.0_9494.1_24570.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9494.1_24570.t1 MAAPLTVCGRLINFVRPTCSTSAQFLKSNEHKGHNLEQTRTKYVSWLMHKDNRRRKTFEEHAPERLRINAIRKNTILPKE IREMADKEIKELPLDSSIVRLHKRCILTSRPRGNVKKWRISRIMFRSLADYNKLPGVTRAVW |
|