Gene
| Gene Model ID | pfu_aug1.0_9606.1_02763 |
|---|---|
| Locus | scaffold9606.1 : 28766 ... 36463 : + |
| To GenomeBrowser | scaffold9606.1:28766..36463 |
| Genes list of scaffold | scaffold9606.1 |
| Synonym | pfu_aug2.0_2095.1_18680 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9606.1_02763.t1 | 16 | 1 | zf-C2H2 | 456 | 473 | 2.2e-08 | 33.9 | 0.059 | 220.0 | 2.5 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 2 | zf-C2H2 | 486 | 504 | 2.2e-08 | 33.9 | 0.0031 | 11.0 | 6.5 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 3 | zf-C2H2 | 517 | 536 | 2.2e-08 | 33.9 | 2.3e-05 | 0.085 | 13.2 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 4 | zf-C2H2 | 745 | 765 | 2.2e-08 | 33.9 | 2.2e-05 | 0.083 | 13.2 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 5 | zf-C2H2 | 778 | 796 | 2.2e-08 | 33.9 | 0.00051 | 1.9 | 8.9 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 6 | zf-C2H2 | 820 | 840 | 2.2e-08 | 33.9 | 0.0022 | 8.2 | 7.0 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 7 | zf-C2H2 | 853 | 874 | 2.2e-08 | 33.9 | 0.00067 | 2.5 | 8.6 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 8 | zf-C2H2 | 897 | 908 | 2.2e-08 | 33.9 | 0.83 | 3100.0 | -1.1 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 9 | zf-C2H2 | 963 | 981 | 2.2e-08 | 33.9 | 5.0e-05 | 0.18 | 12.1 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 10 | zf-C2H2 | 998 | 1022 | 2.2e-08 | 33.9 | 0.0091 | 34.0 | 5.0 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 11 | zf-C2H2 | 1059 | 1078 | 2.2e-08 | 33.9 | 0.052 | 190.0 | 2.6 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 12 | zf-C2H2 | 1121 | 1143 | 2.2e-08 | 33.9 | 0.00041 | 1.5 | 9.2 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 13 | zf-C2H2 | 1191 | 1210 | 2.2e-08 | 33.9 | 0.00038 | 1.4 | 9.3 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 14 | zf-C2H2 | 1224 | 1248 | 2.2e-08 | 33.9 | 0.0063 | 23.0 | 5.5 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 15 | zf-C2H2 | 1274 | 1294 | 2.2e-08 | 33.9 | 0.00035 | 1.3 | 9.5 |
| pfu_aug1.0_9606.1_02763.t1 | 16 | 16 | zf-C2H2 | 1304 | 1327 | 2.2e-08 | 33.9 | 0.04 | 150.0 | 3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9606.1_02763.t1 | gi|260810111|ref|XP_002599847.1| | hypothetical protein BRAFLDRAFT_230189 [Branchiostoma floridae] | 4.0e-31 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_9606.1_02763.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9606.1_02763.t1 atggagaataatggcaccaagattgtggaatgtataagtaacacaaacattaagcaacacgaagatagttacacaagcat gggacagagtgaagaatgtaacacaaacatagaggatgatgaagaatgtaacaaagatgtaaaacaaagtgaagaatgta acacaaacgtgaaacaaagtgaaggatgtaacacgaacgtgaaccaaattaaagaatgcaacacaaatgtgaaacaaagt gaagaatgttacacaaacatgaaccaacgtgaaggatataatacaaacaacgtgaaacaatgtgaagaatgtaccttaga taatgagcatgatgaagaatgtaatacatacatcggacacagtgaagaatgtaacacaagcatggaaaacgacgaagaag gtaacataaacatggagaacaataaagaatgtaacactaatagggagtggagtgtagatgaacaatgtaatattgacata aaagaagaatgtaacagcagtatagagacatatcagcaaaatgataagaatatgacaccagagaaagaatgcgacacaga tagaaaggaagagaatgaatgtaacatcaacttaatacaagatgaacaatgtattacatacatagagcaagatgagcaaa gttcatgtaacatcagtagaaaggaagaggaccaatgtaacatcaacatagagcaagatgagcaatgtattacaaacata gatgaagatgagcaatgtattacaaacatagatgaagatgagcaatctattacaaacatagatcaagatgagcaatctat tacaaacatagagcaagatgagcaatgtattacaaacatagagcaagatgaacaatgttttgcaaacatagagcaagata cacaatgtattacaaacatagagcaagatgagcaatgtattacaaacatagagcaagatgaacaatgttttgcaaacata gagcaagatacacaatgtattacaaacatagagcaagatacacaatgtattacaaacatagagcaagatgagcaatgtat tacaaacatagagcaagatgagcaatgtattacaaacatagatcaagatgagcaatgtattacaaacatagagcaagata cacaatgtattacaaacatagagcaagatacacaatgtattacaaacatagagcaagatacacaatgtattacaaacata gagcaagatacacaatgtattacaaacatagagcaagatgagcaatgtattacaaatatagagcaagatacacaatgtat ttcaaacatagagcaagatgagcaatgtacatgttacatcgacaatgaggttgaagatagcaatttttacccaaggccct gtattatatgttatgaagttttcaattcttctaatctattttacaagcatgttcataaatcgtcacatgagcaaatcact attagaaaaacacctttcaaatgtgtcgtctgtcaaacattctttatctccaagaacgacttactgcaccatgatgcatc gtgtgaaaaacctggtagtcaggagaaatatagatgtaaagtttgtagaaagacttttcccactgcaaaattattcaatc tccatacggctagtccttttgaatgtgggacttgtaactatacaaattgtaatagaaacaaagtatactcgcactgtgct ttggctggtcacgattatgccgtaactaaatatatgcaaatcggaaagctgaatgacgttgacagagaagaaaagaatgg acggagacatagaggaaaggaacttggacggaaaaaaagagaaaaggaaattgaacggagacaaaaagaaaaggaagttg gacggaaacaaagagaaagggaaatcaaacggaagcaaagagaaaaggagattgaacggaaacaaaaagaaaaggaagtt gggcggaaacaaagagaaaagaaaattgaacggaaacaaagagaaaagaaaactgaacggaaacaaagagaaaagaaaac tgaacggaaacaaggagaaaagaaaactgaacggaaacaaagagaaaagaaaactgaacggaaacaaagagaaaagaaac gtgaggaaaatcaaagcgaagatgctgatggtgaacagcctgttgcaggagatttgatcatggaagtggaagagtgcaag actgcacattctgatgaagacgttaatgtttgcaacgagaagcaaaataataatgataataacgaaggaataatgtgcag agtttgtaggaaatttttttcacgcacaggatactttagaaagcacataaaattcatgaagcacgagcagaaaagcttac aacagacagaatttgtatgcaggaaatgtcatcagtttttcgtcagttcatgggatttgaagatgcatgaatattttgaa ttcgacggaggagattgtcgaaaggatccgatcgataaacaaccggaagttcccttaatttgtgttcaatgtgaaacgcc gtacaaaaaaatgaatgctctgcggaaacacatcgttagcacaaaacacgagcagatcagtcctaaagaaacggacttta aatgtttcatgtgtggaaaattctttgttggagattgggacttgacttttcatatgatagaaagaggacacttgggtgac gggcgcccatctgtgagagggaagccactggatagaaggaaaaacgaaagatgtgttacatgtaagatggaatttgaatc tttagaaatggaatgggacttgatttaccaccataaaatgtacggccattttaatgtcggaaaccaagctgaccaaaact gcgatcacatgtatatgaagccaaaatctttaccaaaattatcggaaacggacgtcgctgcatcggttgaaaggtttgaa aatatttgtttacaatgctcgagatatttcaaatataccgaagacttacggaagcatatgctgtggtacagtcatgacaa agaaggaaaagattgtaattataaaacaggcttcaaatgctttacatgcgggagctatttcctacgaaggattgaccttg aatgtcacatgactagaacacggcattctgggagatggaaaccggaggaggaacgaagaatgattcaaatttgcagtttt gaaagtgaagttgcaaagatgaaagcttcatcccaagtttttatgggaataaagtttcagtgcagtgcctgtaaagaagt atttgagactgctacggaatgcagaattcatcttcaagaggttctcttttgtggtcaacctaaactgaaatgcccgattg agggatgctttctacatcaatttactagcattaattttcaacagactcacatagctcaactacattctgaggatttcccc ttcagatgcaaagattgtccacttgttttctttgatgtgaaaaattttaattcgcattctttaaaacacgaatatgagtc gtgtccaagacctagtactcgaacggcagaatctaaaaaggaacaacttcatatcatgaaacttcagaggaaaattcgtg gtatcgatgataaagatgctgtgatacctgacaaactgggtgtaccgcaaacgtgcctcacctgctcggagaaatttgag gatttttatcaccttagaatccacattatgggatctggacatgaacaaatcgtaaaagaagaaaccggcttcacatgttt tacgtgtgacaacaactttgtaaaatttgcagaccttgaacttcacatgtatatgacagctcaccatggaaacccaatga gaactggagaacggaaaatcgaaatggtcgatcactttactgaaaataggaagtgtccataccgatgctctctttgcttc cgtacttttcaaaagcaagaatacatagaaaatcatataaaagccggtgattgtatcatgagatggaggcacaaatgtcc gtgttgtgatcttaatttctacagcagaaacttgtatgaagctcacatgtaccaatgtcatcactatgaattcccattta aatgcgaacacaaggaatgttcaggattagaatttaagaagggatactcaatgcatagaaagtcacatgcaaacatagca aagcgattcactagtaataaaaaaaattcaagtgtcagatttgtgatagaatgttcatcaattatgcaagattttcggca cacagaaagaaagaacatccgccaactggaagtaacggttttaaatgtcagatatgtggtaagatattttttagtaatgc cgcattga |
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Protein
| Protein ID | pfu_aug1.0_9606.1_02763.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9606.1_02763.t1 MENNGTKIVECISNTNIKQHEDSYTSMGQSEECNTNIEDDEECNKDVKQSEECNTNVKQSEGCNTNVNQIKECNTNVKQS EECYTNMNQREGYNTNNVKQCEECTLDNEHDEECNTYIGHSEECNTSMENDEEGNINMENNKECNTNREWSVDEQCNIDI KEECNSSIETYQQNDKNMTPEKECDTDRKEENECNINLIQDEQCITYIEQDEQSSCNISRKEEDQCNINIEQDEQCITNI DEDEQCITNIDEDEQSITNIDQDEQSITNIEQDEQCITNIEQDEQCFANIEQDTQCITNIEQDEQCITNIEQDEQCFANI EQDTQCITNIEQDTQCITNIEQDEQCITNIEQDEQCITNIDQDEQCITNIEQDTQCITNIEQDTQCITNIEQDTQCITNI EQDTQCITNIEQDEQCITNIEQDTQCISNIEQDEQCTCYIDNEVEDSNFYPRPCIICYEVFNSSNLFYKHVHKSSHEQIT IRKTPFKCVVCQTFFISKNDLLHHDASCEKPGSQEKYRCKVCRKTFPTAKLFNLHTASPFECGTCNYTNCNRNKVYSHCA LAGHDYAVTKYMQIGKLNDVDREEKNGRRHRGKELGRKKREKEIERRQKEKEVGRKQREREIKRKQREKEIERKQKEKEV GRKQREKKIERKQREKKTERKQREKKTERKQGEKKTERKQREKKTERKQREKKREENQSEDADGEQPVAGDLIMEVEECK TAHSDEDVNVCNEKQNNNDNNEGIMCRVCRKFFSRTGYFRKHIKFMKHEQKSLQQTEFVCRKCHQFFVSSWDLKMHEYFE FDGGDCRKDPIDKQPEVPLICVQCETPYKKMNALRKHIVSTKHEQISPKETDFKCFMCGKFFVGDWDLTFHMIERGHLGD GRPSVRGKPLDRRKNERCVTCKMEFESLEMEWDLIYHHKMYGHFNVGNQADQNCDHMYMKPKSLPKLSETDVAASVERFE NICLQCSRYFKYTEDLRKHMLWYSHDKEGKDCNYKTGFKCFTCGSYFLRRIDLECHMTRTRHSGRWKPEEERRMIQICSF ESEVAKMKASSQVFMGIKFQCSACKEVFETATECRIHLQEVLFCGQPKLKCPIEGCFLHQFTSINFQQTHIAQLHSEDFP FRCKDCPLVFFDVKNFNSHSLKHEYESCPRPSTRTAESKKEQLHIMKLQRKIRGIDDKDAVIPDKLGVPQTCLTCSEKFE DFYHLRIHIMGSGHEQIVKEETGFTCFTCDNNFVKFADLELHMYMTAHHGNPMRTGERKIEMVDHFTENRKCPYRCSLCF RTFQKQEYIENHIKAGDCIMRWRHKCPCCDLNFYSRNLYEAHMYQCHHYEFPFKCEHKECSGLEFKKGYSMHRKSHANIA KRFTSNKKNSSVRFVIECSSIMQDFRHTERKNIRQLEVTVLNVRYVVRYFLVMPH |
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