Gene
| Gene Model ID | pfu_aug1.0_962.1_58320 |
|---|---|
| Locus | scaffold962.1 : 30846 ... 35496 : + |
| To GenomeBrowser | scaffold962.1:30846..35496 |
| Genes list of scaffold | scaffold962.1 |
| Synonym | pfu_aug2.0_1443.1_11669 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_962.1_58320.t1 | 6 | 1 | zf-C2H2 | 4 | 13 | 5.9e-13 | 48.3 | 0.6 | 890.0 | 0.5 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 1 | zf-H2C2_2 | 6 | 29 | 2.2e-21 | 74.9 | 3.1e-07 | 0.00047 | 20.3 |
| pfu_aug1.0_962.1_58320.t1 | 6 | 2 | zf-C2H2 | 19 | 41 | 5.9e-13 | 48.3 | 1.9e-06 | 0.0028 | 17.8 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 1 | zf-C2H2_4 | 19 | 41 | 1.8e-07 | 30.9 | 0.0021 | 3.1 | 8.3 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 2 | zf-H2C2_2 | 34 | 57 | 2.2e-21 | 74.9 | 7.3e-08 | 0.00011 | 22.3 |
| pfu_aug1.0_962.1_58320.t1 | 6 | 3 | zf-C2H2 | 47 | 69 | 5.9e-13 | 48.3 | 5.5e-05 | 0.082 | 13.2 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 2 | zf-C2H2_4 | 47 | 70 | 1.8e-07 | 30.9 | 6.4e-07 | 0.00095 | 19.3 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 3 | zf-H2C2_2 | 63 | 91 | 2.2e-21 | 74.9 | 0.00033 | 0.48 | 10.7 |
| pfu_aug1.0_962.1_58320.t1 | 6 | 4 | zf-C2H2 | 84 | 106 | 5.9e-13 | 48.3 | 6.7e-06 | 0.01 | 16.1 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 3 | zf-C2H2_4 | 84 | 106 | 1.8e-07 | 30.9 | 0.0012 | 1.7 | 9.1 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 4 | zf-H2C2_2 | 99 | 122 | 2.2e-21 | 74.9 | 2.7e-10 | 4.0e-07 | 29.9 |
| pfu_aug1.0_962.1_58320.t1 | 6 | 5 | zf-C2H2 | 112 | 134 | 5.9e-13 | 48.3 | 1.4e-07 | 0.00021 | 21.4 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 4 | zf-C2H2_4 | 112 | 134 | 1.8e-07 | 30.9 | 9.4e-06 | 0.014 | 15.6 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 5 | zf-H2C2_2 | 126 | 146 | 2.2e-21 | 74.9 | 8.6e-07 | 0.0013 | 18.9 |
| pfu_aug1.0_962.1_58320.t1 | 6 | 6 | zf-C2H2 | 140 | 164 | 5.9e-13 | 48.3 | 0.054 | 80.0 | 3.8 |
| pfu_aug1.0_962.1_58320.t1 | 5 | 5 | zf-C2H2_4 | 140 | 160 | 1.8e-07 | 30.9 | 0.11 | 170.0 | 2.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_962.1_58320.t1 | gi|344306551|ref|XP_003421950.1| | 2.0e-24 |
Transcript
| Transcript ID | pfu_aug1.0_962.1_58320.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_962.1_58320.t1 atgcaacgcggtaagctcagaattcacatgatggttcacaaagaggtaaggccgtaccagtgtgacatgtgcggcatgtg cttcaagatgcagtgcactcttctgagccacatcaaacggcacgagggtaaatcggtacacaagtgcaactactgtgata aaaaattccgttccattgagggcgcgagaaaccatatgctaaagcatcacatcaacccggaggaagcacggaagatgaag ttcaaagtttacacgtgcgagcattgtggaaagatgatgggacaaaaacacctgtatatgcgacatgtacggttacacac gggtcatcgaccgtggcagtgtgaagagtgcggaaaaacgttcaccataccgtcggctcttaacacacacaagaagatcc acatgcagaggaagccttaccattgtgatgtctgtaatctaggttgtgtggattttacgaaattcaccaaacacttacaa acgacaaaacaccagatgaatttagagaaaaaatccctgaaacaaaagaagaaggtcaccgagcccgataatgaagaaga ggcatttctggagaactgggatccatctgggcttgaactgccgtgtgatagtaaaggtcagcctctggaatttcgaaacg tcttcaatattcagaatatgatcaagaaagcggaggaaagtacggctccggcaaatgtggaagtgccggaaattggcata gaaaacggaggtagctcgtcgaacattgttataagtataccccagggaatatctcctgatatgatcactcaattattaca aagcggacaacttcaggccgctgacggtaatatatttctatctccgtcatcgcttgatggagcagcggaaatgagcgaca gcactgctgatgcagtagcggcattgttgtcatga |
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Protein
| Protein ID | pfu_aug1.0_962.1_58320.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_962.1_58320.t1 MQRGKLRIHMMVHKEVRPYQCDMCGMCFKMQCTLLSHIKRHEGKSVHKCNYCDKKFRSIEGARNHMLKHHINPEEARKMK FKVYTCEHCGKMMGQKHLYMRHVRLHTGHRPWQCEECGKTFTIPSALNTHKKIHMQRKPYHCDVCNLGCVDFTKFTKHLQ TTKHQMNLEKKSLKQKKKVTEPDNEEEAFLENWDPSGLELPCDSKGQPLEFRNVFNIQNMIKKAEESTAPANVEVPEIGI ENGGSSSNIVISIPQGISPDMITQLLQSGQLQAADGNIFLSPSSLDGAAEMSDSTADAVAALLS |
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