Gene
| Gene Model ID | pfu_aug1.0_9632.1_38937 |
|---|---|
| Locus | scaffold9632.1 : 170 ... 11175 : - |
| To GenomeBrowser | scaffold9632.1:170..11175 |
| Genes list of scaffold | scaffold9632.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-48 related 2 |
| Description | Best hit to NP_835455 pancreas transcription factor 1 subunit alpha [Homo sapiens] with 1e-24 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is supported by NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9632.1_38937.t1 | 1 | 1 | HLH | 88 | 139 | 4.3e-19 | 67.9 | 6.5e-23 | 9.6e-19 | 66.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9632.1_38937.t1 | gi|242020670|ref|XP_002430775.1| | hypothetical protein Phum_PHUM498340 [Pediculus humanus corporis] | 1.0e-36 |
Transcript
| Transcript ID | pfu_aug1.0_9632.1_38937.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9632.1_38937.t1 atgcgtgatatggctgttcctcgagagattcccgatcaaattttcagcttttgtcgcgcttttcaagaaaacatcgaaaa cacctgcgattcggatcgatttcaccacccacgggaattgcgaacttataaaaactctcagtgcgcaagtcaaaaagttt ttgagaaatctacactagcagtcgacgaaactgacgaaatatttcttgaagaacttcgccgacagattgaccctttgaaa gaggaattcgcatttcgtcatcaaagacaagccgctaacatccgggaacgcagaagaatgctcagtatcaacagtgcgtt tgaagaactgcgagctcatgtgccaacttttccttacgaaaagcgcctgtctaaaatcgacacgttgcgcctagcaattg cgtacattgcgcttttgcgcgatattttgcaggccgacgccagcgacccactggaatatatagaaagaacactgagagta caagaggagacccaaattagagctatttggaatactagtgatcttactgcccgtttgtcctggattaagtgggacagtct aggtgtaagacgacggcccattccggattcatttcaacaagcaccgttctaa |
|
Protein
| Protein ID | pfu_aug1.0_9632.1_38937.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9632.1_38937.t1 MRDMAVPREIPDQIFSFCRAFQENIENTCDSDRFHHPRELRTYKNSQCASQKVFEKSTLAVDETDEIFLEELRRQIDPLK EEFAFRHQRQAANIRERRRMLSINSAFEELRAHVPTFPYEKRLSKIDTLRLAIAYIALLRDILQADASDPLEYIERTLRV QEETQIRAIWNTSDLTARLSWIKWDSLGVRRRPIPDSFQQAPF |
|