Gene
| Gene Model ID | pfu_aug1.0_9634.1_31790 |
|---|---|
| Locus | scaffold9634.1 : 13646 ... 52906 : + |
| To GenomeBrowser | scaffold9634.1:13646..52906 |
| Genes list of scaffold | scaffold9634.1 |
| Synonym | pfu_aug2.0_652.1_07762 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9634.1_31790.t1 | 2 | 1 | DUF3437 | 455 | 487 | 8.3e-35 | 118.3 | 0.62 | 9200.0 | -3.6 |
| pfu_aug1.0_9634.1_31790.t1 | 2 | 2 | DUF3437 | 911 | 998 | 8.3e-35 | 118.3 | 2.1e-38 | 3.1e-34 | 116.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9634.1_31790.t1 | gi|117956381|ref|NP_598774.2| | proteasome activator complex subunit 4 [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_9634.1_31790.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9634.1_31790.t1 atggtaaacctgttctctagattggcacatgataatataggctacattgactggagtccatatgtatcgaagatatttaa tcgcttcttgcgaagttttaacctacctgtggggacacagaaagtgcaggttggcagatctaataacacgtatgatattg agtctacggtcatctggatagtatctatgatgactgaaagagaactttgctcagcaactgctcagtttgaggattttgtt ctacaatttctagacagagtatttctgttgatagagaacagtgctcaagaacattctcatgtagagacgacacgtctcaa ctctgaacaaaccatggtcgaaatggccttaacatctactttcacttcagttttgcaacagtgttctgctccaatttacc agtcagccttacgtcgtttgtttaacttcgtgtcaaacagtgtgtatgaaatcaaagttggagggagattcacgtcaaat ttatgcagggcagcagctaggctcgtcagatgcaatgggaaagtgctactaccatacagagaagacttattatcagtgct atcattaacactacacttgaagtgtatacaagggtatgaattagctggacagttactgagatttgtgcttcgtgctttaa cattacattaccctttggattacaagagcattgcagaatcttttgacaggccagtgacggagtaccttgccatcaatgac tgggcaatgccaggtgatatttataacctgaacgttgagtggcatataccgtcatcggaggaaattagctacgctcatac cataatcaactctctactggggacggagttagatattatagcaaaaatacaggaggctcctgttgagagagcggagctag agttggagagcaagatatttgaaacggtgctatttttctttggtgcatccaagccagactttgatgcccgatggaaaagt ttccattcagtaaaggaagcagtggaggacaagttgagggagaagaagaaacatttacggcctatattggtggacagggt agtactgcagcaagagctacgcatgctgcatagtaatagccgagtgttcacagaactacacaagaaaatcttactacagt tgtatggactctccctcagccgatatggagaggtgcggaaaaaagctcaagcagtgctgtgttctatccatacaaattac gcctactcctataggtgtatacttgatgaccttgcagaaaaactggtgaacagtaatactcccgaaaaacagtttaaagg tgccttgtatgttatctatggtaacggcagatataacctagcagccaagaggagttggaaagtgattggaaagctgtggc cggccatcgtccaagctcaacactttgagaagccatctatactcaaaatagtggatgatatcgttatcaaggtgtctaaa ggcatggaaagtcctgccatcagaatcaatactaccagtggttgtatagctgctgccaagtgcctgttagaatgtagagt gccaaatcctaaccagagtcagctagtggaacaagatctgaaagaaggtgttcagtatgaagaaaagaggaacgaacaag ctaaaggagagatgaaggtgtatgctgactcttcccagcagccaaagctggacaggactctggacgagctgccgacggag gagaaacccatctacacgtgcctagccgataaaaacttcgttagtaagtttgtggaacttcttgcattggaggaacataa aggcagagataaattcagggaaaagcattcaacacttctgaagggcatattcaggaattttggtgacactttcttagaag aatttaaatctaagatagagactttattagaagacatgtcacctagctgtgagagtaaacacagatgtgctatggaaata ttagcagggattataagagggtcaaaacactggccgtatgaaaagacgaaagccttgtgggactgggcatcagtcatcat agcggacatactgaaaaagatgactcccgagacccagaaagactggggtacattcttcactgtgatatcagagagtaggg atccgaggaagttacactggttgtttgaactcttattgaaggaacctgtactggagggaaactcgtcaatgcatgataca agtttgctgtccagtatatttctatacgactacaaggtatcaccagaatgctgtacacagagtccacgtagacaagattt tgtagatgttgttatcagagatttagacccactgaaagactcagttctaacagaaaatggaaattctcttggtgatgaaa acaaagtcaatggtgacagcaaggtatcagaaaattctaaaggtgaagagaaaatggaggttgatggtgagaattctaca gatcaggaaaaagaaagggatgagcaaatcaaagaatgtaaaactgtgatgaaatggttgtccaatggaatgggtaaaat gtacacatccatgccatctgaacttctacagttcttgccaataatctgtgctttggaatacgaaaccaaggatgaggagt tgaagtcagactgttgtatggcattagcgtgcttctctcaggcactgatacaaccagacacgatgcaggcagcactccat gctattaaagagaaccattttgagagtctgagcaagaacaagttgagacgtaggaaaggagttacacaggaccctgttga cttgtccgtgttgataaagcgacacgctggtgtactaggactgagtgcctttgtacaggcctacccttacgacgtaccag agtttatgccacagatactgatggaccttagtaatcatgttaacgatccacaacccatacagatgacggtgaagaagacc ctgtccaacttccgtcgcactcatcatgataactggcacgatcataaacagatgtttacggacgaccagctggttatatt aacagatttactagtgtcgcccacgtactatgcatga |
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Protein
| Protein ID | pfu_aug1.0_9634.1_31790.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9634.1_31790.t1 MVNLFSRLAHDNIGYIDWSPYVSKIFNRFLRSFNLPVGTQKVQVGRSNNTYDIESTVIWIVSMMTERELCSATAQFEDFV LQFLDRVFLLIENSAQEHSHVETTRLNSEQTMVEMALTSTFTSVLQQCSAPIYQSALRRLFNFVSNSVYEIKVGGRFTSN LCRAAARLVRCNGKVLLPYREDLLSVLSLTLHLKCIQGYELAGQLLRFVLRALTLHYPLDYKSIAESFDRPVTEYLAIND WAMPGDIYNLNVEWHIPSSEEISYAHTIINSLLGTELDIIAKIQEAPVERAELELESKIFETVLFFFGASKPDFDARWKS FHSVKEAVEDKLREKKKHLRPILVDRVVLQQELRMLHSNSRVFTELHKKILLQLYGLSLSRYGEVRKKAQAVLCSIHTNY AYSYRCILDDLAEKLVNSNTPEKQFKGALYVIYGNGRYNLAAKRSWKVIGKLWPAIVQAQHFEKPSILKIVDDIVIKVSK GMESPAIRINTTSGCIAAAKCLLECRVPNPNQSQLVEQDLKEGVQYEEKRNEQAKGEMKVYADSSQQPKLDRTLDELPTE EKPIYTCLADKNFVSKFVELLALEEHKGRDKFREKHSTLLKGIFRNFGDTFLEEFKSKIETLLEDMSPSCESKHRCAMEI LAGIIRGSKHWPYEKTKALWDWASVIIADILKKMTPETQKDWGTFFTVISESRDPRKLHWLFELLLKEPVLEGNSSMHDT SLLSSIFLYDYKVSPECCTQSPRRQDFVDVVIRDLDPLKDSVLTENGNSLGDENKVNGDSKVSENSKGEEKMEVDGENST DQEKERDEQIKECKTVMKWLSNGMGKMYTSMPSELLQFLPIICALEYETKDEELKSDCCMALACFSQALIQPDTMQAALH AIKENHFESLSKNKLRRRKGVTQDPVDLSVLIKRHAGVLGLSAFVQAYPYDVPEFMPQILMDLSNHVNDPQPIQMTVKKT LSNFRRTHHDNWHDHKQMFTDDQLVILTDLLVSPTYYA |
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