Gene
Gene Model ID | pfu_aug1.0_964.1_00569 |
---|---|
Locus | scaffold964.1 : 19694 ... 37635 : - |
To GenomeBrowser | scaffold964.1:19694..37635 |
Genes list of scaffold | scaffold964.1 |
Synonym | pfu_aug2.0_113.1_10285 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | WntA |
Description | phylogenetic tree shows close affinity to squid (Euprymna scolopes) WntA. BLAST result closest to P. dumerilii WntA CAD37169.2 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_964.1_00569.t1 | 1 | 1 | wnt | 52 | 358 | 0.0 | 394.5 | 0.0 | 0.0 | 394.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_964.1_00569.t1 | gi|343958028|emb|CAD37169.2| | Wnta protein [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
Transcript
Transcript ID | pfu_aug1.0_964.1_00569.t1 |
---|---|
Definition | - |
>pfu_aug1.0_964.1_00569.t1 atgcagattacatcggagcagttgctgagtttctttatacccattgctttcctggtacacagtacacagtcatcttggtg gtacctaggaatcattagcacctcacaacctacaatgagagagctggaaaccaaagaagacgccgtcagtacgtgctctg atatgaaatttttggcgccaaagcaaagacagctgtgccgagagagcaatgagaagaaacttttacaagtgatcagtaac ggagcttctgttggaataaatgaatgtcaacatcagttttcaacgaggcgatggaattgttctacattcaactccactga tgttttcggtggcattctaagaaagaagagccgagaaacagcctatatttacgcaatttcatctgcgggtgtgatgcaca gtattacaagagcatgcgcgaaaggagagttggatcattgcggatgtgacgtcaaggtgcgcagaaaagacactgccggt caatttgaatggggtggttgttccgagaacattcgatacggcgcaaaattttcacgtgaatttgtggattccaaggagga aagaaaatcagcatcacagttaatgaacttatggaataatgaagcaggcagaaaggctatcaaaaatcagatggagttgg tttgtaaatgccacggagtttccgcttcctgttccgttaaaatatgttggcgcaaaatgcgtaacttcagattgattgga caatttttaaaagataaattcgatggcgcaagcttagtaaaatataacaaaagaaaaaataaactaaagagaagaaccag agacatgaaaaagccgaccaaaaaagacttagtatatctagaagaatcaccagacttttgtgaatatgatttgaggtctg gttccctggggaccaagggtaggcagtgtgacaaagacagtctgggtatagatggttgtacgctaatgtgctgtgggagg ggttattataccattgttagagaacttaaggaagactgtgactgtaaatttgtatggtgttgtcgagtggactgcaaaaa gtgttcacaacgtgtggaactgcattactgtaactaa |
Protein
Protein ID | pfu_aug1.0_964.1_00569.t1 |
---|---|
Definition | - |
>pfu_aug1.0_964.1_00569.t1 MQITSEQLLSFFIPIAFLVHSTQSSWWYLGIISTSQPTMRELETKEDAVSTCSDMKFLAPKQRQLCRESNEKKLLQVISN GASVGINECQHQFSTRRWNCSTFNSTDVFGGILRKKSRETAYIYAISSAGVMHSITRACAKGELDHCGCDVKVRRKDTAG QFEWGGCSENIRYGAKFSREFVDSKEERKSASQLMNLWNNEAGRKAIKNQMELVCKCHGVSASCSVKICWRKMRNFRLIG QFLKDKFDGASLVKYNKRKNKLKRRTRDMKKPTKKDLVYLEESPDFCEYDLRSGSLGTKGRQCDKDSLGIDGCTLMCCGR GYYTIVRELKEDCDCKFVWCCRVDCKKCSQRVELHYCN |