Gene
| Gene Model ID | pfu_aug1.0_9640.1_31791 |
|---|---|
| Locus | scaffold9640.1 : 3516 ... 14173 : + |
| To GenomeBrowser | scaffold9640.1:3516..14173 |
| Genes list of scaffold | scaffold9640.1 |
| Synonym | pfu_aug2.0_390.1_00685 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9640.1_31791.t1 | 2 | 1 | PCI | 66 | 76 | 2.6e-12 | 46.9 | 0.37 | 2800.0 | -1.4 |
| pfu_aug1.0_9640.1_31791.t1 | 2 | 2 | PCI | 160 | 258 | 2.6e-12 | 46.9 | 3.5e-16 | 2.6e-12 | 46.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9640.1_31791.t1 | gi|209734974|gb|ACI68356.1| | Eukaryotic translation initiation factor 3 subunit M [Salmo salar] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9640.1_31791.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9640.1_31791.t1 atgatggaaccagtcacccatttctgtgagaagatccttaaatcacctcagggagataaaagggccgctacaagactcaa actactgtctaacctattttatggcctggatgagaagtccccactcagggcagatctgtacgtgtcaatggtaaaactag cccagcaatcggacctcgtccctcaacttcaactcaacttagaccagataaagaagtggatttcccagtgggacattagt acagtcaaactccagaatcttctcagatctatacatgatgctcttatagactctaatatgagtgaaatggctaccaaggt tatgattgatctacttggaacgtatacagaagataatgcttcacaggctaagaatgatgcccacagatgcatagtcacac atctaggtgaccctaacacattcttaatggaccatctcctggcactgaagcccgtcaaattcctggaaggggagctcatc catgatctcttgacgatatttgtatccgggaaaatagcagattaccaacagttttacaaaaacaacactgactttgttac ctctcttggtctctcccatgatcagaatctccgtaagatgaggttcctcaccttcatacagatggctgaaaaccggaaag aaatcgactacagcattatcgaaaaggaaatgcagcttgaagaagatgatatagaggacttcatcattgatgttctaaga accaaatctgtgaaagctaaaatagatcagatgcagagaaaaattatcatccactctacgatccatcgtacgtacggacg tcaacagtggcagcttctgcgtcagcagcttgtacaatggcgggaaaggctggcacaagtacagacgggactccagcagc tagatattatacaaaaccaggcaacaacacaagcttag |
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Protein
| Protein ID | pfu_aug1.0_9640.1_31791.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9640.1_31791.t1 MMEPVTHFCEKILKSPQGDKRAATRLKLLSNLFYGLDEKSPLRADLYVSMVKLAQQSDLVPQLQLNLDQIKKWISQWDIS TVKLQNLLRSIHDALIDSNMSEMATKVMIDLLGTYTEDNASQAKNDAHRCIVTHLGDPNTFLMDHLLALKPVKFLEGELI HDLLTIFVSGKIADYQQFYKNNTDFVTSLGLSHDQNLRKMRFLTFIQMAENRKEIDYSIIEKEMQLEEDDIEDFIIDVLR TKSVKAKIDQMQRKIIIHSTIHRTYGRQQWQLLRQQLVQWRERLAQVQTGLQQLDIIQNQATTQA |
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