Gene
| Gene Model ID | pfu_aug1.0_9684.1_60643 |
|---|---|
| Locus | scaffold9684.1 : 10416 ... 15947 : + |
| To GenomeBrowser | scaffold9684.1:10416..15947 |
| Genes list of scaffold | scaffold9684.1 |
| Synonym | pfu_aug2.0_300.1_00577 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-48 related 1-2 |
| Description | Best hit to NP_835455 pancreas transcription factor 1 subunit alpha [Homo sapiens] with 5e-28 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is supported by NJ, ML, and BI. |
| mRNA evidence |
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-PTFa-like |
| Description | scaf11169.1; 10131...10364 (-) was used for analyses. Best hit to NP_835455 pancreas transcription factor 1 subunit alpha by a BLASTP search against NCBI Homo sapiens nr database. TThis annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9684.1_60643.t1 | 1 | 1 | HLH | 64 | 116 | 3.0e-20 | 71.6 | 3.1e-24 | 4.7e-20 | 71.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9684.1_60643.t1 | gi|72104716|ref|XP_787068.1| | PREDICTED: pancreas transcription factor 1 subunit alpha-like [Strongylocentrotus purpuratus] | 1.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9684.1_60643.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9684.1_60643.t1 atggagaattttctttgcgcactggacgaggacttctttgatttttacgacacatctatagaatactcagattccctgga ccctgactcaccgtatagcaacgaatctgatcaggaaaatcagtttttcaatttcaaagttgaccagccttacaaactga aacgaccccatggagtcaagaaaatacagcaacgtaaagctgcaaatcaacgagaaagacgtcgaatgaaatctatcaat gatgcatttgacaatttaagacagtgcattccgagttctctgaatgctgaaagaagactttctaaagttgacactctgag actggccattcggtacatctcgtatctttccgaacttgtccaaagttgttccgattacagcagcgaatcgcctgcaagta aaaaaccacgaacacaagagaaagtcatccttcggtggaatttcacggatccttcagaccaaagcaacgagcaaatgaat cttgtaggacattccctttcctggtccaacgaaaaaccagccaatcaaacggcagataacaaatttacagcaaaaatatg gacaccggaagtaccaactgcagccgaccttatggtgttaaattcctacagtaacgattatcaggaattcatttga |
|
Protein
| Protein ID | pfu_aug1.0_9684.1_60643.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9684.1_60643.t1 MENFLCALDEDFFDFYDTSIEYSDSLDPDSPYSNESDQENQFFNFKVDQPYKLKRPHGVKKIQQRKAANQRERRRMKSIN DAFDNLRQCIPSSLNAERRLSKVDTLRLAIRYISYLSELVQSCSDYSSESPASKKPRTQEKVILRWNFTDPSDQSNEQMN LVGHSLSWSNEKPANQTADNKFTAKIWTPEVPTAADLMVLNSYSNDYQEFI |
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