Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_973.1_36751
Locus scaffold973.1 : 15206 ... 36026 : +
To GenomeBrowser scaffold973.1:15206..36026
Genes list of scaffold scaffold973.1
Synonym pfu_aug2.0_545.1_17538

Manual annotation
Study fieldother
Gene namecalmodulin like
DescriptionBlast best hit to DDBJ AY513748 (Strongylocentrotus intermedius )
mRNA evidence

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_973.1_36751.t1 7 1 UPF0154 1 21 3.4e-14 52.2 0.026 23.0 4.7
pfu_aug1.0_973.1_36751.t1 13 1 EF-hand_8 2 38 0.0 242.5 1.1e-12 9.9e-10 37.8
pfu_aug1.0_973.1_36751.t1 7 1 EF-hand_9 4 39 7.7e-33 112.2 0.0003 0.26 11.2
pfu_aug1.0_973.1_36751.t1 7 1 EF-hand_7 9 37 0.0 272.5 7.2e-07 0.00063 19.8
pfu_aug1.0_973.1_36751.t1 12 1 EF-hand_1 12 39 0.0 282.8 7.4e-11 6.4e-08 31.3
pfu_aug1.0_973.1_36751.t1 7 1 EF-hand_4 13 38 3.9e-13 49.0 0.0034 3.0 7.6
pfu_aug1.0_973.1_36751.t1 11 1 EF-hand_5 17 37 0.0 177.1 2.3e-05 0.02 14.2
pfu_aug1.0_973.1_36751.t1 11 1 EF-hand_6 18 39 0.0 213.8 4.3e-05 0.038 13.8
pfu_aug1.0_973.1_36751.t1 13 2 EF-hand_8 46 75 0.0 242.5 2.5e-05 0.022 14.3
pfu_aug1.0_973.1_36751.t1 5 1 SPARC_Ca_bdg 48 103 3.7e-11 43.0 0.053 47.0 4.0
pfu_aug1.0_973.1_36751.t1 12 2 EF-hand_1 49 77 0.0 282.8 5.4e-09 4.7e-06 25.5
pfu_aug1.0_973.1_36751.t1 11 2 EF-hand_6 49 76 0.0 213.8 2.3e-08 2.0e-05 24.0
pfu_aug1.0_973.1_36751.t1 5 1 Caleosin 49 70 1.9e-06 27.5 0.54 470.0 0.2
pfu_aug1.0_973.1_36751.t1 7 2 EF-hand_7 50 103 0.0 272.5 5.8e-15 5.1e-12 45.7
pfu_aug1.0_973.1_36751.t1 11 2 EF-hand_5 50 71 0.0 177.1 3.3e-06 0.0029 16.8
pfu_aug1.0_973.1_36751.t1 7 2 EF-hand_9 53 101 7.7e-33 112.2 0.0005 0.44 10.5
pfu_aug1.0_973.1_36751.t1 13 3 EF-hand_8 62 104 0.0 242.5 2.6e-13 2.2e-10 39.9
pfu_aug1.0_973.1_36751.t1 7 2 UPF0154 65 93 3.4e-14 52.2 0.00013 0.11 12.1
pfu_aug1.0_973.1_36751.t1 7 2 EF-hand_4 65 104 3.9e-13 49.0 0.026 23.0 4.8
pfu_aug1.0_973.1_36751.t1 12 3 EF-hand_1 85 103 0.0 282.8 2.7e-07 0.00024 20.1
pfu_aug1.0_973.1_36751.t1 11 3 EF-hand_6 86 103 0.0 213.8 0.031 27.0 4.9
pfu_aug1.0_973.1_36751.t1 11 3 EF-hand_5 87 102 0.0 177.1 2.6e-05 0.023 14.0
pfu_aug1.0_973.1_36751.t1 11 4 EF-hand_6 177 206 0.0 213.8 2.0e-10 1.7e-07 30.4
pfu_aug1.0_973.1_36751.t1 12 4 EF-hand_1 178 205 0.0 282.8 4.3e-10 3.7e-07 28.9
pfu_aug1.0_973.1_36751.t1 13 4 EF-hand_8 178 194 0.0 242.5 0.0057 5.0 6.8
pfu_aug1.0_973.1_36751.t1 7 3 EF-hand_7 179 225 0.0 272.5 1.5e-09 1.3e-06 28.4
pfu_aug1.0_973.1_36751.t1 11 4 EF-hand_5 179 202 0.0 177.1 9.7e-08 8.5e-05 21.7
pfu_aug1.0_973.1_36751.t1 5 2 Caleosin 180 211 1.9e-06 27.5 0.0015 1.3 8.5
pfu_aug1.0_973.1_36751.t1 7 3 EF-hand_9 181 232 7.7e-33 112.2 9.6e-05 0.084 12.8
pfu_aug1.0_973.1_36751.t1 5 2 SPARC_Ca_bdg 182 224 3.7e-11 43.0 0.097 85.0 3.2
pfu_aug1.0_973.1_36751.t1 13 5 EF-hand_8 190 225 0.0 242.5 1.1e-07 9.5e-05 21.9
pfu_aug1.0_973.1_36751.t1 7 3 UPF0154 194 223 3.4e-14 52.2 0.002 1.8 8.2
pfu_aug1.0_973.1_36751.t1 12 5 EF-hand_1 213 225 0.0 282.8 0.11 95.0 2.6
pfu_aug1.0_973.1_36751.t1 7 3 EF-hand_4 221 275 3.9e-13 49.0 0.051 45.0 3.8
pfu_aug1.0_973.1_36751.t1 5 3 SPARC_Ca_bdg 239 293 3.7e-11 43.0 0.2 170.0 2.2
pfu_aug1.0_973.1_36751.t1 5 3 Caleosin 246 279 1.9e-06 27.5 0.26 230.0 1.2
pfu_aug1.0_973.1_36751.t1 13 6 EF-hand_8 248 274 0.0 242.5 8.2e-07 0.00072 19.1
pfu_aug1.0_973.1_36751.t1 12 6 EF-hand_1 249 276 0.0 282.8 3.5e-10 3.1e-07 29.2
pfu_aug1.0_973.1_36751.t1 11 5 EF-hand_6 249 277 0.0 213.8 1.5e-10 1.3e-07 30.9
pfu_aug1.0_973.1_36751.t1 11 5 EF-hand_5 251 272 0.0 177.1 7.9e-09 6.9e-06 25.1
pfu_aug1.0_973.1_36751.t1 7 4 EF-hand_9 252 282 7.7e-33 112.2 0.0065 5.7 6.9
pfu_aug1.0_973.1_36751.t1 7 4 EF-hand_7 253 292 0.0 272.5 1.1e-08 9.3e-06 25.6
pfu_aug1.0_973.1_36751.t1 13 7 EF-hand_8 262 292 0.0 242.5 0.00095 0.83 9.3
pfu_aug1.0_973.1_36751.t1 7 4 UPF0154 267 280 3.4e-14 52.2 0.54 470.0 0.4
pfu_aug1.0_973.1_36751.t1 7 4 EF-hand_4 271 308 3.9e-13 49.0 0.28 250.0 1.4
pfu_aug1.0_973.1_36751.t1 13 8 EF-hand_8 314 361 0.0 242.5 0.0005 0.44 10.2
pfu_aug1.0_973.1_36751.t1 12 7 EF-hand_1 336 364 0.0 282.8 1.9e-06 0.0016 17.5
pfu_aug1.0_973.1_36751.t1 11 6 EF-hand_6 336 363 0.0 213.8 8.3e-07 0.00072 19.2
pfu_aug1.0_973.1_36751.t1 7 5 EF-hand_4 336 394 3.9e-13 49.0 0.042 37.0 4.1
pfu_aug1.0_973.1_36751.t1 11 6 EF-hand_5 337 352 0.0 177.1 0.0012 1.0 8.7
pfu_aug1.0_973.1_36751.t1 7 5 EF-hand_7 338 394 0.0 272.5 3.8e-14 3.3e-11 43.1
pfu_aug1.0_973.1_36751.t1 7 5 EF-hand_9 339 395 7.7e-33 112.2 2.4e-05 0.021 14.7
pfu_aug1.0_973.1_36751.t1 7 5 UPF0154 355 378 3.4e-14 52.2 0.068 60.0 3.3
pfu_aug1.0_973.1_36751.t1 13 9 EF-hand_8 361 394 0.0 242.5 6.1e-10 5.3e-07 29.1
pfu_aug1.0_973.1_36751.t1 12 8 EF-hand_1 372 394 0.0 282.8 5.8e-07 0.00051 19.1
pfu_aug1.0_973.1_36751.t1 11 7 EF-hand_5 377 393 0.0 177.1 0.23 200.0 1.5
pfu_aug1.0_973.1_36751.t1 11 7 EF-hand_6 378 394 0.0 213.8 0.017 15.0 5.8
pfu_aug1.0_973.1_36751.t1 5 4 SPARC_Ca_bdg 408 480 3.7e-11 43.0 3.4e-05 0.029 14.3
pfu_aug1.0_973.1_36751.t1 7 6 EF-hand_4 414 483 3.9e-13 49.0 0.00016 0.14 11.9
pfu_aug1.0_973.1_36751.t1 5 4 Caleosin 417 458 1.9e-06 27.5 0.00057 0.5 9.9
pfu_aug1.0_973.1_36751.t1 12 9 EF-hand_1 422 450 0.0 282.8 1.2e-11 1.0e-08 33.8
pfu_aug1.0_973.1_36751.t1 11 8 EF-hand_6 422 451 0.0 213.8 8.7e-12 7.6e-09 34.7
pfu_aug1.0_973.1_36751.t1 13 10 EF-hand_8 423 447 0.0 242.5 0.0004 0.35 10.5
pfu_aug1.0_973.1_36751.t1 7 6 EF-hand_7 424 483 0.0 272.5 2.7e-17 2.4e-14 53.2
pfu_aug1.0_973.1_36751.t1 11 8 EF-hand_5 424 447 0.0 177.1 5.5e-09 4.8e-06 25.6
pfu_aug1.0_973.1_36751.t1 7 6 EF-hand_9 426 484 7.7e-33 112.2 3.5e-10 3.1e-07 30.2
pfu_aug1.0_973.1_36751.t1 13 11 EF-hand_8 435 485 0.0 242.5 3.6e-15 3.1e-12 45.8
pfu_aug1.0_973.1_36751.t1 7 6 UPF0154 438 467 3.4e-14 52.2 0.0036 3.1 7.4
pfu_aug1.0_973.1_36751.t1 12 10 EF-hand_1 458 485 0.0 282.8 2.5e-11 2.2e-08 32.8
pfu_aug1.0_973.1_36751.t1 11 9 EF-hand_6 459 484 0.0 213.8 4.9e-05 0.043 13.7
pfu_aug1.0_973.1_36751.t1 11 9 EF-hand_5 459 483 0.0 177.1 1.2e-06 0.001 18.2
pfu_aug1.0_973.1_36751.t1 5 5 SPARC_Ca_bdg 484 554 3.7e-11 43.0 4.4e-06 0.0038 17.2
pfu_aug1.0_973.1_36751.t1 13 12 EF-hand_8 493 515 0.0 242.5 0.00022 0.19 11.3
pfu_aug1.0_973.1_36751.t1 12 11 EF-hand_1 495 523 0.0 282.8 4.2e-12 3.7e-09 35.2
pfu_aug1.0_973.1_36751.t1 11 10 EF-hand_6 495 524 0.0 213.8 3.1e-11 2.7e-08 33.0
pfu_aug1.0_973.1_36751.t1 7 7 EF-hand_7 496 556 0.0 272.5 1.1e-22 9.4e-20 70.5
pfu_aug1.0_973.1_36751.t1 11 10 EF-hand_5 496 520 0.0 177.1 1.3e-09 1.2e-06 27.6
pfu_aug1.0_973.1_36751.t1 7 7 EF-hand_4 496 557 3.9e-13 49.0 1.6e-07 0.00014 21.5
pfu_aug1.0_973.1_36751.t1 5 5 Caleosin 496 525 1.9e-06 27.5 0.42 360.0 0.5
pfu_aug1.0_973.1_36751.t1 7 7 EF-hand_9 499 557 7.7e-33 112.2 9.1e-07 0.0008 19.2
pfu_aug1.0_973.1_36751.t1 13 13 EF-hand_8 508 556 0.0 242.5 6.5e-19 5.7e-16 57.8
pfu_aug1.0_973.1_36751.t1 7 7 UPF0154 509 539 3.4e-14 52.2 0.0013 1.1 8.8
pfu_aug1.0_973.1_36751.t1 12 12 EF-hand_1 531 557 0.0 282.8 8.5e-12 7.4e-09 34.2
pfu_aug1.0_973.1_36751.t1 11 11 EF-hand_5 535 556 0.0 177.1 9.8e-06 0.0086 15.3
pfu_aug1.0_973.1_36751.t1 11 11 EF-hand_6 537 557 0.0 213.8 7.1e-05 0.062 13.2

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
egg-Dshape 1
trochophore 1
>Adult tissues
Dshape 1
mantle 2
mantlePallium 1

Transcript
Transcript IDpfu_aug1.0_973.1_36751.t1
Definition- 
>pfu_aug1.0_973.1_36751.t1
atgagatcactgggacaaaaccccactgctcaggaagtatcacaaatgatcagggaggtcgacgccgacggaaatggcat
ggttgactttgacgagttcctcacgatgatgtcaaagacgttacgaggggtagattctgaagacgaactacggcaagcat
tcctcgtgtttgatagaaataagagcgggtacatcacggccccggaactgaagtttgtaatggctaaaatgggagagaaa
ctgacagacgaagagatagaggaaatgatcagaatggctgatcttaatggagacggcaaaatcaattataaagccggatt
gcgaagcaaaatccggtctatgaaatggagatgtctgtctcatgatttcgcaatgaaatatacgaaaggtccaatgcgat
tgtgtacgtacttgtacgttgcttacgtgttaactgagttgtgcatgtacgtgcgtacaattagcatacgatttcaacct
tacatggatttagtacttgcacgtgccgttctcgcactaattttcaccaaatttcgagaagcctttagtttatttgacaa
ggacggtgatgggttgataacaactagagagctgagtacagtcatgaggtccctaggacaaaacccaagtgcacatgaac
tggcagagatgatcagggaagtggatgcagatgataccgacttcgttttggacaaatttctgattatgttccaggatgag
acgtttaccgacgagcagatagaagagttccaggcagtgtttgacgcttttgacaaagatggcgacgggtctgtcaccct
ggatgaactcaagatggcgatgaatcaactaggacaaacatcggaaatagaagatgttctcaaagagtctgattttcaaa
atcacaaaaattgtatcagtcttatttataaacttataaattgtatcgtagattttgaagaaataaagttcaaggacttc
ctgaattttctgcgcaaaaagttacgagagccggaagtagaagaagaaatgaaagcagcattccgaatattcgaccgaag
cgggtcaggttttattagatctagtgacgtcaagactgtgatgtcacatatgggggaaaggttaaccaatcaggaagctg
atgagatgatacgattagcagatttaaaagggaacggatatgtaacatacgatgatttccttcataactctattcactat
ataaaaaggatgaatatcaaactatttgataacacggaacaaatgaatgaagaacaaattgcagaattcaaggaagcatt
cagtttgtttgataaggatggagatgggacgattactaccaaagagcttgggactgtgatgagatcattgggacagaacc
caacagaggcagaattacaggacatgatcaatgaagtggatgctgatggtaatggcacaattgattttcccgagtttctt
acaatgatggcaaagaagacaaaagaaacagactgtgaagaggagcttaaagaggccttcagagtgtttgataaagacgg
aaatggtcagataagtgctgctgagctacgtcacgtgatgacgaacctcggagaaaaactcacagacgaggaggtggacg
agatgataaaagaggcggacattgatggcgatggtcaagttaattatgaagaatttgtgaaaatgatgagacctacataa

Protein
Protein IDpfu_aug1.0_973.1_36751.t1
Definition- 
>pfu_aug1.0_973.1_36751.t1
MRSLGQNPTAQEVSQMIREVDADGNGMVDFDEFLTMMSKTLRGVDSEDELRQAFLVFDRNKSGYITAPELKFVMAKMGEK
LTDEEIEEMIRMADLNGDGKINYKAGLRSKIRSMKWRCLSHDFAMKYTKGPMRLCTYLYVAYVLTELCMYVRTISIRFQP
YMDLVLARAVLALIFTKFREAFSLFDKDGDGLITTRELSTVMRSLGQNPSAHELAEMIREVDADDTDFVLDKFLIMFQDE
TFTDEQIEEFQAVFDAFDKDGDGSVTLDELKMAMNQLGQTSEIEDVLKESDFQNHKNCISLIYKLINCIVDFEEIKFKDF
LNFLRKKLREPEVEEEMKAAFRIFDRSGSGFIRSSDVKTVMSHMGERLTNQEADEMIRLADLKGNGYVTYDDFLHNSIHY
IKRMNIKLFDNTEQMNEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL
TMMAKKTKETDCEEELKEAFRVFDKDGNGQISAAELRHVMTNLGEKLTDEEVDEMIKEADIDGDGQVNYEEFVKMMRPT

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495