Gene
| Gene Model ID | pfu_aug1.0_9733.1_24627 |
|---|---|
| Locus | scaffold9733.1 : 12388 ... 21535 : - |
| To GenomeBrowser | scaffold9733.1:12388..21535 |
| Genes list of scaffold | scaffold9733.1 |
| Synonym | pfu_aug2.0_95.1_16901 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9733.1_24627.t1 | 1 | 1 | HYLS1_C | 230 | 318 | 3.2e-33 | 113.7 | 1.2e-36 | 8.7e-33 | 112.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9733.1_24627.t1 | gi|260818603|ref|XP_002604472.1| | hypothetical protein BRAFLDRAFT_79227 [Branchiostoma floridae] | 2.0e-38 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_9733.1_24627.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9733.1_24627.t1 atgaagaataagatgagccaggaagaagactttgattatacagatgatgagatcagggaggagctgtccaagctgggata tcaaggtgttcccgacggcagacttaaagaattcaaaaaagacctaaagctgcttatgatgcatgaaagattaaagtcac agaatacaactatatcttcacattaccaaacagaccagtcagaatcctacttagaggatgattntacacccaaagagagg ttgtttgatgtggaaagaacgcctgattcaaaccatccatacacagacagaaatttttcatcaaatatagaggatagtga gaacagatatgattttggaggaccagttattaagaaacctttaccaactaaaccacaaacaagccatgaccaatactcca tgtacagtaccaggcccacggaaccatcagctctcgatgacgacgtctcggaaactgaatctgaacgacgatttgttaaa cggaaagtcttaaggaagaaaactgatggcaccagagttattgatgaatcgttcacagaaagtgaaacaggtagtttact agacatcaatgagcgtgtgaggaggctcggtctggatgatttagatacagcaaggcccagaacagcaccttgtgagccac cttacagactagctccagatgatcctagaccagcatcagttattcttcggccgtcggagcaccctcataccaaacattta cggaaatcagatcctgtggcaaggtttcagcaattccgacagtcttggtccatgcagaaagtaccgggagagaaaaatca caagcagctgagatggaatatcagagaacaaatgttatcacaagaccaagtcatagaaaagaaagctcccaaatcatata tacccaacagctacgtagttcctaccgagaaaaaacgcaagaatctccgctggcaaatcaggatggatatggcacaggga cagatgcctccgcatggatattaccacgagtactga |
|
Protein
| Protein ID | pfu_aug1.0_9733.1_24627.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9733.1_24627.t1 MKNKMSQEEDFDYTDDEIREELSKLGYQGVPDGRLKEFKKDLKLLMMHERLKSQNTTISSHYQTDQSESYLEDDXTPKER LFDVERTPDSNHPYTDRNFSSNIEDSENRYDFGGPVIKKPLPTKPQTSHDQYSMYSTRPTEPSALDDDVSETESERRFVK RKVLRKKTDGTRVIDESFTESETGSLLDINERVRRLGLDDLDTARPRTAPCEPPYRLAPDDPRPASVILRPSEHPHTKHL RKSDPVARFQQFRQSWSMQKVPGEKNHKQLRWNIREQMLSQDQVIEKKAPKSYIPNSYVVPTEKKRKNLRWQIRMDMAQG QMPPHGYYHEY |
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