Gene
| Gene Model ID | pfu_aug1.0_9742.1_02790 |
|---|---|
| Locus | scaffold9742.1 : 5439 ... 15365 : - |
| To GenomeBrowser | scaffold9742.1:5439..15365 |
| Genes list of scaffold | scaffold9742.1 |
| Synonym | pfu_aug2.0_1427.1_24913 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9742.1_02790.t1 | 1 | 1 | VWA | 1 | 157 | 7.9e-29 | 100.6 | 2.4e-32 | 9.0e-29 | 100.4 |
| pfu_aug1.0_9742.1_02790.t1 | 1 | 1 | VWA_2 | 27 | 148 | 1.0e-08 | 35.4 | 3.5e-12 | 1.3e-08 | 35.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9742.1_02790.t1 | gi|327282764|ref|XP_003226112.1| | PREDICTED: collagen alpha-1(XXI) chain isoform X1 [Anolis carolinensis] | 1.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9742.1_02790.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9742.1_02790.t1 atgacggaaataaacctacagaaggaactatcctttgttatgagcgtcattgaaaccctagatatcggaataggatctcg tcagacgagagttggcgtgatttcgttcagcacagacgccatgttggaagtcgggcttgggaaatactcaagcaagagtg agctggagagagacttactatatgtggagttttcaagaggcgacacttacacgcataaggcaatagacatcatgctggat gagtttgcgaatgctagacgtaatgtaaaacggataggggttgtaataactgatggtggttccacggacccctacagcct taaggaccggctggtaaaagtacgaagtcagagaattactatgtttgcaataggtgttggagatgcagttaacccagagg agctctccgatattggtagtgaccctgatgaaacctacgtttcgcatgtagacaatctagacgctctgggaaaacttaac ttagaattaggattgaagagatgctctccagcatag |
|
Protein
| Protein ID | pfu_aug1.0_9742.1_02790.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9742.1_02790.t1 MTEINLQKELSFVMSVIETLDIGIGSRQTRVGVISFSTDAMLEVGLGKYSSKSELERDLLYVEFSRGDTYTHKAIDIMLD EFANARRNVKRIGVVITDGGSTDPYSLKDRLVKVRSQRITMFAIGVGDAVNPEELSDIGSDPDETYVSHVDNLDALGKLN LELGLKRCSPA |
|