Gene
Gene Model ID | pfu_aug1.0_977.1_36754 |
---|---|
Locus | scaffold977.1 : 13236 ... 44040 : + |
To GenomeBrowser | scaffold977.1:13236..44040 |
Genes list of scaffold | scaffold977.1 |
Synonym | pfu_aug2.0_63.1_10208 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_977.1_36754.t1 | 2 | 1 | EST1_DNA_bind | 5 | 177 | 9.5e-30 | 103.7 | 2.3e-28 | 1.2e-24 | 87.0 |
pfu_aug1.0_977.1_36754.t1 | 2 | 2 | EST1_DNA_bind | 449 | 548 | 9.5e-30 | 103.7 | 1.5e-07 | 0.00076 | 18.7 |
pfu_aug1.0_977.1_36754.t1 | 1 | 1 | PIN_4 | 666 | 746 | 2.8e-06 | 27.4 | 2.0e-09 | 9.7e-06 | 25.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_977.1_36754.t1 | gi|224084008|ref|XP_002188639.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
>Adult tissues | |
Dshape | 1 |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_977.1_36754.t1 |
---|---|
Definition | - |
>pfu_aug1.0_977.1_36754.t1 atgcggtatttccagtgcgaggcagcttatcattacatcagatgtatggtatgtgagaaaccatttgacggtgctgaggg caacttggaccgcttatttgaaaagaatcgaaaaagattccgtgaaatacagcaaatgtcatcctcaacattagctcctg agttacaaaggcaacatgatgtgaagtttttcttgatccattttctacacttactggatgttttctttgatgccaacaaa aggatatcagcgggagagttacaggacagctgtcagtcggctctacagagttttaacctgtgtatgttctacaaaccaga cctgtatgctgaggaggacagccgagacgagaacctacagtatttggacgatgatctggttttcaaactcgtcatcatgt gtatggccaccatacatctactacaaatcagaggatccaaacacgtgactgcggccaccgcctttttactggctctgttc tctcacatacttaatcatgttgtcattcgcttgcacggtgctctgtatgagagggaaaacccaaacaaactactcaacca tcagattgtacaaaatggtgaggagttgtcagatgtagactctggagagatgtgtaacggaccgtccgaggggaatgatc ggcaagataaactgacctccgggagggacggagatgaccacttgtctgatactttcttgtcagaagagtccgaagaagaa gaagagtttgtaggattttttgctcacgactcggactctgacctctcagacaatttgatggagagccaagaattggagcc aggattttctgctgagtcagccttaacaaaatctggtaaagatgagcgagtagcaaatgtcaactctaaccatactactg acaggagttctcatcatggtactacctccgtaggttctcaggggacggtacagaacgactcctctatctggactagcgag aaagactaccttgctcacttctcctctgaactattaacatcgtcatcaaccactctgctaggtcagaactttaaactgtc tacgacaggtacaaaaactaatgacctcaatgttcaacagatagagaattgtcaggaagtgatgcagggcaagagacagg ttccagtgccacctggatttgctcagtcatcagaagctagacatgtggcagagataacagacaagcttgctaactttgtt atagagactgacactgaagctagtattataccaactgatgcagagcaatctggctgtgatgaatcaacaaccgaggctga tgaccagggtagtacaaccgagtcggctgaaggacctgaaacggagcacagatttttacagaacacattggatgccgtac aaagtgaggggttgttagccatcgtcaaagtcatgtgtgattggatgaaatgtaatacaggtgtgatcatgacgtgtgca cagagctctcagtccctgtggcatagactttccgtacttctcaatattcttcctaaagaaactgtgatagcagaacatga ccagtgctggttagatgaactgaagactgtgttaacaacaaccagacatggagagtggatgcaggtgttcccactcagag aggatatcaatctctggctgttcactcctctctctgaggctcataatctgatagaattttctaacaggaggagggggcaa ttatctgaaatacaagagtgttttctgagaataggatgtctaagacaatttggtcacttcctgtcagagctcgagaactt gatgttccggtatgatacgacattagatgctttcattggtccatctcaaccagtcagtgcagaggaaaatcaaagagagg ctatggacagactggcccatgaggagagtaggcgtaaccagttgatgagggacatggcccagcttcgccttcaggtcntc tgtctgtctgctgaggtaagccagttggaggggtcattggagaagacagactacacccacttccccccttacctgatccc tgataccagatgtctgtgtgagtccctcagctttgtccgacagcttgtacagacaggcaagggaatcatcatcattccat tatcagtaattgatacattagactttatgaagaaggattccgtaggagctagggatgctataagatggttagaggccgag ttccgcaagggaaacaggtacatcagagcccaaaaaagtaatgagaagcattcagaaaatattccaaagaatttgaagaa aaccaacagagaagcatggtgtgtgtatgagatggtagcatgtgcccgataccttgcccagcaaggtggtgacatcagca ccgccaacatggtggccatcttgtcaacaaagaatttacagcttatgccgtacccacagcctctgaagaaagccctcgct aactgtcaacaagcagggatttcactggagaatgtaccactattcaccaacaagtggaaggaccttctgaagagtaacgg ctga |
Protein
Protein ID | pfu_aug1.0_977.1_36754.t1 |
---|---|
Definition | - |
>pfu_aug1.0_977.1_36754.t1 MRYFQCEAAYHYIRCMVCEKPFDGAEGNLDRLFEKNRKRFREIQQMSSSTLAPELQRQHDVKFFLIHFLHLLDVFFDANK RISAGELQDSCQSALQSFNLCMFYKPDLYAEEDSRDENLQYLDDDLVFKLVIMCMATIHLLQIRGSKHVTAATAFLLALF SHILNHVVIRLHGALYERENPNKLLNHQIVQNGEELSDVDSGEMCNGPSEGNDRQDKLTSGRDGDDHLSDTFLSEESEEE EEFVGFFAHDSDSDLSDNLMESQELEPGFSAESALTKSGKDERVANVNSNHTTDRSSHHGTTSVGSQGTVQNDSSIWTSE KDYLAHFSSELLTSSSTTLLGQNFKLSTTGTKTNDLNVQQIENCQEVMQGKRQVPVPPGFAQSSEARHVAEITDKLANFV IETDTEASIIPTDAEQSGCDESTTEADDQGSTTESAEGPETEHRFLQNTLDAVQSEGLLAIVKVMCDWMKCNTGVIMTCA QSSQSLWHRLSVLLNILPKETVIAEHDQCWLDELKTVLTTTRHGEWMQVFPLREDINLWLFTPLSEAHNLIEFSNRRRGQ LSEIQECFLRIGCLRQFGHFLSELENLMFRYDTTLDAFIGPSQPVSAEENQREAMDRLAHEESRRNQLMRDMAQLRLQVX CLSAEVSQLEGSLEKTDYTHFPPYLIPDTRCLCESLSFVRQLVQTGKGIIIIPLSVIDTLDFMKKDSVGARDAIRWLEAE FRKGNRYIRAQKSNEKHSENIPKNLKKTNREAWCVYEMVACARYLAQQGGDISTANMVAILSTKNLQLMPYPQPLKKALA NCQQAGISLENVPLFTNKWKDLLKSNG |