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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_977.1_36754
Locus scaffold977.1 : 13236 ... 44040 : +
To GenomeBrowser scaffold977.1:13236..44040
Genes list of scaffold scaffold977.1
Synonym pfu_aug2.0_63.1_10208

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_977.1_36754.t1 2 1 EST1_DNA_bind 5 177 9.5e-30 103.7 2.3e-28 1.2e-24 87.0
pfu_aug1.0_977.1_36754.t1 2 2 EST1_DNA_bind 449 548 9.5e-30 103.7 1.5e-07 0.00076 18.7
pfu_aug1.0_977.1_36754.t1 1 1 PIN_4 666 746 2.8e-06 27.4 2.0e-09 9.7e-06 25.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_977.1_36754.t1 gi|224084008|ref|XP_002188639.1| 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 1
8-16cell 1
>Adult tissues
Dshape 1
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_977.1_36754.t1
Definition-
>pfu_aug1.0_977.1_36754.t1
atgcggtatttccagtgcgaggcagcttatcattacatcagatgtatggtatgtgagaaaccatttgacggtgctgaggg
caacttggaccgcttatttgaaaagaatcgaaaaagattccgtgaaatacagcaaatgtcatcctcaacattagctcctg
agttacaaaggcaacatgatgtgaagtttttcttgatccattttctacacttactggatgttttctttgatgccaacaaa
aggatatcagcgggagagttacaggacagctgtcagtcggctctacagagttttaacctgtgtatgttctacaaaccaga
cctgtatgctgaggaggacagccgagacgagaacctacagtatttggacgatgatctggttttcaaactcgtcatcatgt
gtatggccaccatacatctactacaaatcagaggatccaaacacgtgactgcggccaccgcctttttactggctctgttc
tctcacatacttaatcatgttgtcattcgcttgcacggtgctctgtatgagagggaaaacccaaacaaactactcaacca
tcagattgtacaaaatggtgaggagttgtcagatgtagactctggagagatgtgtaacggaccgtccgaggggaatgatc
ggcaagataaactgacctccgggagggacggagatgaccacttgtctgatactttcttgtcagaagagtccgaagaagaa
gaagagtttgtaggattttttgctcacgactcggactctgacctctcagacaatttgatggagagccaagaattggagcc
aggattttctgctgagtcagccttaacaaaatctggtaaagatgagcgagtagcaaatgtcaactctaaccatactactg
acaggagttctcatcatggtactacctccgtaggttctcaggggacggtacagaacgactcctctatctggactagcgag
aaagactaccttgctcacttctcctctgaactattaacatcgtcatcaaccactctgctaggtcagaactttaaactgtc
tacgacaggtacaaaaactaatgacctcaatgttcaacagatagagaattgtcaggaagtgatgcagggcaagagacagg
ttccagtgccacctggatttgctcagtcatcagaagctagacatgtggcagagataacagacaagcttgctaactttgtt
atagagactgacactgaagctagtattataccaactgatgcagagcaatctggctgtgatgaatcaacaaccgaggctga
tgaccagggtagtacaaccgagtcggctgaaggacctgaaacggagcacagatttttacagaacacattggatgccgtac
aaagtgaggggttgttagccatcgtcaaagtcatgtgtgattggatgaaatgtaatacaggtgtgatcatgacgtgtgca
cagagctctcagtccctgtggcatagactttccgtacttctcaatattcttcctaaagaaactgtgatagcagaacatga
ccagtgctggttagatgaactgaagactgtgttaacaacaaccagacatggagagtggatgcaggtgttcccactcagag
aggatatcaatctctggctgttcactcctctctctgaggctcataatctgatagaattttctaacaggaggagggggcaa
ttatctgaaatacaagagtgttttctgagaataggatgtctaagacaatttggtcacttcctgtcagagctcgagaactt
gatgttccggtatgatacgacattagatgctttcattggtccatctcaaccagtcagtgcagaggaaaatcaaagagagg
ctatggacagactggcccatgaggagagtaggcgtaaccagttgatgagggacatggcccagcttcgccttcaggtcntc
tgtctgtctgctgaggtaagccagttggaggggtcattggagaagacagactacacccacttccccccttacctgatccc
tgataccagatgtctgtgtgagtccctcagctttgtccgacagcttgtacagacaggcaagggaatcatcatcattccat
tatcagtaattgatacattagactttatgaagaaggattccgtaggagctagggatgctataagatggttagaggccgag
ttccgcaagggaaacaggtacatcagagcccaaaaaagtaatgagaagcattcagaaaatattccaaagaatttgaagaa
aaccaacagagaagcatggtgtgtgtatgagatggtagcatgtgcccgataccttgcccagcaaggtggtgacatcagca
ccgccaacatggtggccatcttgtcaacaaagaatttacagcttatgccgtacccacagcctctgaagaaagccctcgct
aactgtcaacaagcagggatttcactggagaatgtaccactattcaccaacaagtggaaggaccttctgaagagtaacgg
ctga

Protein
Protein IDpfu_aug1.0_977.1_36754.t1
Definition-
>pfu_aug1.0_977.1_36754.t1
MRYFQCEAAYHYIRCMVCEKPFDGAEGNLDRLFEKNRKRFREIQQMSSSTLAPELQRQHDVKFFLIHFLHLLDVFFDANK
RISAGELQDSCQSALQSFNLCMFYKPDLYAEEDSRDENLQYLDDDLVFKLVIMCMATIHLLQIRGSKHVTAATAFLLALF
SHILNHVVIRLHGALYERENPNKLLNHQIVQNGEELSDVDSGEMCNGPSEGNDRQDKLTSGRDGDDHLSDTFLSEESEEE
EEFVGFFAHDSDSDLSDNLMESQELEPGFSAESALTKSGKDERVANVNSNHTTDRSSHHGTTSVGSQGTVQNDSSIWTSE
KDYLAHFSSELLTSSSTTLLGQNFKLSTTGTKTNDLNVQQIENCQEVMQGKRQVPVPPGFAQSSEARHVAEITDKLANFV
IETDTEASIIPTDAEQSGCDESTTEADDQGSTTESAEGPETEHRFLQNTLDAVQSEGLLAIVKVMCDWMKCNTGVIMTCA
QSSQSLWHRLSVLLNILPKETVIAEHDQCWLDELKTVLTTTRHGEWMQVFPLREDINLWLFTPLSEAHNLIEFSNRRRGQ
LSEIQECFLRIGCLRQFGHFLSELENLMFRYDTTLDAFIGPSQPVSAEENQREAMDRLAHEESRRNQLMRDMAQLRLQVX
CLSAEVSQLEGSLEKTDYTHFPPYLIPDTRCLCESLSFVRQLVQTGKGIIIIPLSVIDTLDFMKKDSVGARDAIRWLEAE
FRKGNRYIRAQKSNEKHSENIPKNLKKTNREAWCVYEMVACARYLAQQGGDISTANMVAILSTKNLQLMPYPQPLKKALA
NCQQAGISLENVPLFTNKWKDLLKSNG

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