Gene
| Gene Model ID | pfu_aug1.0_977.1_36758 |
|---|---|
| Locus | scaffold977.1 : 98896 ... 108104 : + |
| To GenomeBrowser | scaffold977.1:98896..108104 |
| Genes list of scaffold | scaffold977.1 |
| Synonym | pfu_aug2.0_63.1_10211 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_977.1_36758.t1 | 2 | 1 | zf-C3HC4 | 16 | 58 | 7.3e-08 | 31.9 | 5.4e-11 | 7.3e-08 | 31.9 |
| pfu_aug1.0_977.1_36758.t1 | 2 | 1 | zf-C3HC4_2 | 16 | 58 | 7.6e-08 | 32.2 | 5.6e-11 | 7.6e-08 | 32.2 |
| pfu_aug1.0_977.1_36758.t1 | 2 | 1 | zf-RING_2 | 16 | 58 | 6.6e-07 | 29.0 | 4.9e-10 | 6.6e-07 | 29.0 |
| pfu_aug1.0_977.1_36758.t1 | 2 | 1 | zf-C3HC4_4 | 16 | 58 | 4.2e-06 | 26.5 | 3.1e-09 | 4.2e-06 | 26.5 |
| pfu_aug1.0_977.1_36758.t1 | 3 | 1 | zf-B_box | 30 | 42 | 3.0e-09 | 36.6 | 0.039 | 52.0 | 3.8 |
| pfu_aug1.0_977.1_36758.t1 | 3 | 2 | zf-B_box | 88 | 131 | 3.0e-09 | 36.6 | 1.9e-08 | 2.6e-05 | 24.0 |
| pfu_aug1.0_977.1_36758.t1 | 2 | 2 | zf-RING_2 | 88 | 118 | 6.6e-07 | 29.0 | 0.0045 | 6.1 | 6.7 |
| pfu_aug1.0_977.1_36758.t1 | 2 | 2 | zf-C3HC4 | 89 | 117 | 7.3e-08 | 31.9 | 0.0063 | 8.5 | 6.1 |
| pfu_aug1.0_977.1_36758.t1 | 2 | 2 | zf-C3HC4_2 | 89 | 117 | 7.6e-08 | 32.2 | 0.012 | 16.0 | 5.6 |
| pfu_aug1.0_977.1_36758.t1 | 2 | 2 | zf-C3HC4_4 | 97 | 118 | 4.2e-06 | 26.5 | 0.21 | 280.0 | 1.4 |
| pfu_aug1.0_977.1_36758.t1 | 3 | 3 | zf-B_box | 142 | 178 | 3.0e-09 | 36.6 | 2.0e-08 | 2.7e-05 | 23.9 |
| pfu_aug1.0_977.1_36758.t1 | 3 | 1 | NHL | 417 | 432 | 2.4e-08 | 33.5 | 0.17 | 230.0 | 2.0 |
| pfu_aug1.0_977.1_36758.t1 | 3 | 2 | NHL | 563 | 587 | 2.4e-08 | 33.5 | 7.2e-08 | 9.7e-05 | 22.1 |
| pfu_aug1.0_977.1_36758.t1 | 3 | 3 | NHL | 609 | 624 | 2.4e-08 | 33.5 | 0.047 | 64.0 | 3.7 |
Transcript
| Transcript ID | pfu_aug1.0_977.1_36758.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_977.1_36758.t1 atggataggaaaagaacattagatttccttttgaaaaacgtgaggtgctacttatgtttggaccagtttcgggatcccag actgctggactgtcaccattcatactgcagaaaatgtctggagagctatgtggccacagtgagtaatgaaggtgtcattg aatgtccattgtgcgatgtcgaaacagaaacacccaaaaaaggagtttcgcaattggagaaaaacatctattacgccatc agtcaacaggaaatgggggtgtcgtgtgctgtctgtggtgaacaagaatttgcgaaaggacactgtatggattgtaacca ggatttctgtgagaattgtctaaaatctcattctgggatgacagcgacaagagagcatcacattgtctcaatagggaggg acaacctaggagggaaggtcacccggaaccacttttgtaagacgcacacagaagagaaattatgttacttttgtacgact tgccaaaaactcgtatgccaacactgcaacatgacaaaccacaagcaccataagtccaaatactacactgaaattaccga tgtcagcagaaaacggctgaaggaggtggtgtcgtcgatggagtatatcaactacttctgctggctggcagagaggaagg aagaattctctcaacagatccagaaatacaaaaaggcagaagaaaaggcatacgctgatgttgatactcatgcagagctc ctacactccatggtggaacaaacacgacagaagatgctggacacgatagcagacgacaccaagaagatcatccagcctgc caaagacgccatcaaactgatagagaaaaacatcttgtcaataacagggatatatttgtatgcaagaaatgttgccaacc agggtgatgacgttacagtagtcgacaaaagttcccgagttagaacaaaactggaaaagatgaaatcttcaaaattgctt cctactttggagccgaataccgttcagcatttcgtaccacacccggttactgtggaagagatccagtcaatctatggtga aataaagagaggggtaacggagacagacgataaaaagtcagaatgcctcatgcggttcgaattagatgacgaggaaacta caatatcttctatactacctactgaggacggcagggcatggcttattgagggtgtgggaggactgctgaggctgtatgat acggagggcaggattcataatactcttcgtcttggcgtacaagcagacgacatggcgatgacggatgacggcacaatcct tgtgtcctgtaattcagctaaagaaatcaaagccatcgacgaaaggcttcgaataaaatcattcgtcaacacgccatact gtgctagaggattagcactggacaataaatgttcgtctctcttcatatgtacaacagagaaaaatgccttcttcgatcat gatgccacgcataacaaccaagttgttcgcaccatgctgggtgatagcaaacgatgggaagtaccagacattctggaatt ttcctccagtccaacagtcgagtaccctgctcgagcagtcgtcacgaaaaacggatacatcgcgatatctgactggaaaa gagaatgtgtgacaatactggacggtacaggacacatcgagacagaatatttcggacttcggaaagggagagacaacgac cacttttgtccacgtggtatatgttgcagcaaatctgatggcaggctactagtcgccgactataacaccagtcgtataat tcagatcgacgaaaccggtcagatattccagacggtgctaacaaaagctgacggcatccacaagccatggtccgtctcag taggtgttgacggattattatggacagctaatttcaaaattatattgaccgttattgaaaatttcatcgacatctttaat atcggatttgtaacttcagtgataacttactgcactatgattctcttgatactcaaaacaaaatccttggctttggccga gtacaagtatcatgtaggcaaaattgacaaattcaaattagaaatcaactatcggatagaatgccactttcgattgaatt caactgattatcgtgccttagttgttttgtgtaaaactatcatttttagaacgtcctaa |
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Protein
| Protein ID | pfu_aug1.0_977.1_36758.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_977.1_36758.t1 MDRKRTLDFLLKNVRCYLCLDQFRDPRLLDCHHSYCRKCLESYVATVSNEGVIECPLCDVETETPKKGVSQLEKNIYYAI SQQEMGVSCAVCGEQEFAKGHCMDCNQDFCENCLKSHSGMTATREHHIVSIGRDNLGGKVTRNHFCKTHTEEKLCYFCTT CQKLVCQHCNMTNHKHHKSKYYTEITDVSRKRLKEVVSSMEYINYFCWLAERKEEFSQQIQKYKKAEEKAYADVDTHAEL LHSMVEQTRQKMLDTIADDTKKIIQPAKDAIKLIEKNILSITGIYLYARNVANQGDDVTVVDKSSRVRTKLEKMKSSKLL PTLEPNTVQHFVPHPVTVEEIQSIYGEIKRGVTETDDKKSECLMRFELDDEETTISSILPTEDGRAWLIEGVGGLLRLYD TEGRIHNTLRLGVQADDMAMTDDGTILVSCNSAKEIKAIDERLRIKSFVNTPYCARGLALDNKCSSLFICTTEKNAFFDH DATHNNQVVRTMLGDSKRWEVPDILEFSSSPTVEYPARAVVTKNGYIAISDWKRECVTILDGTGHIETEYFGLRKGRDND HFCPRGICCSKSDGRLLVADYNTSRIIQIDETGQIFQTVLTKADGIHKPWSVSVGVDGLLWTANFKIILTVIENFIDIFN IGFVTSVITYCTMILLILKTKSLALAEYKYHVGKIDKFKLEINYRIECHFRLNSTDYRALVVLCKTIIFRTS |
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