Gene
| Gene Model ID | pfu_aug1.0_9790.1_02815 |
|---|---|
| Locus | scaffold9790.1 : 55456 ... 60236 : + |
| To GenomeBrowser | scaffold9790.1:55456..60236 |
| Genes list of scaffold | scaffold9790.1 |
| Synonym | pfu_aug2.0_386.1_20712 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9790.1_02815.t1 | 1 | 1 | Tctex-1 | 113 | 211 | 3.4e-23 | 81.4 | 6.8e-27 | 5.0e-23 | 80.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9790.1_02815.t1 | gi|72048298|ref|XP_784517.1| | PREDICTED: tctex1 domain-containing protein 1-B [Strongylocentrotus purpuratus] | 3.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9790.1_02815.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9790.1_02815.t1 atgagtacaaggataatgaagagattgtctttggctgtgaacaatgaggacggtgagcgtaagacagcgggaagcacgtc agacgctacgttacgtgcaacggttcccacgcccgaccgcaagaaaagcgtcgtcggcagcatctcaagtggccgtaaca gcacgtccggtccttctattgtcggactaatggcttcaaagagatttgcgaagcgactatcgtctaaagttcaactcaac agagaagaaacgcaaggatcctctcttcagctgcccacaaatctaactctgaaagaacccacgtacaggatggaaccggg cgtcaagttcaaatcatctacagtggagaatttaatcaaagagacagtggattatagaatggatggtatgagatataaca agaaaatcacgcctaatctgtgtaaaataatgactgacgatatcaaggagaaagtcaaaaagcttaactatgacagatat aaaattgtgtgtttgattcagatgggtgagaacaagaaccagggaatggttgcttctagcagatgtcagtgggaccctaa aacggacacttacgctacgtatgcctatcaaaacaagcatttattctgtactgccactgtttatggaatttacaacgagt ga |
|
Protein
| Protein ID | pfu_aug1.0_9790.1_02815.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9790.1_02815.t1 MSTRIMKRLSLAVNNEDGERKTAGSTSDATLRATVPTPDRKKSVVGSISSGRNSTSGPSIVGLMASKRFAKRLSSKVQLN REETQGSSLQLPTNLTLKEPTYRMEPGVKFKSSTVENLIKETVDYRMDGMRYNKKITPNLCKIMTDDIKEKVKKLNYDRY KIVCLIQMGENKNQGMVASSRCQWDPKTDTYATYAYQNKHLFCTATVYGIYNE |
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