Gene
| Gene Model ID | pfu_aug1.0_9818.1_53428 |
|---|---|
| Locus | scaffold9818.1 : 5326 ... 19727 : + |
| To GenomeBrowser | scaffold9818.1:5326..19727 |
| Genes list of scaffold | scaffold9818.1 |
| Synonym | pfu_aug2.0_188.1_27014 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9818.1_53428.t1 | 1 | 1 | Ribosomal_S13_N | 1 | 60 | 1.3e-30 | 104.9 | 5.7e-34 | 2.1e-30 | 104.3 |
| pfu_aug1.0_9818.1_53428.t1 | 2 | 1 | Ribosomal_S15 | 33 | 42 | 1.6e-10 | 40.5 | 1.0 | 3700.0 | -2.3 |
| pfu_aug1.0_9818.1_53428.t1 | 2 | 2 | Ribosomal_S15 | 66 | 107 | 1.6e-10 | 40.5 | 9.8e-14 | 3.6e-10 | 39.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9818.1_53428.t1 | gi|146336951|gb|ABQ23589.1| | ribosomal protein S13 [Pinctada martensii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 2 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9818.1_53428.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9818.1_53428.t1 atgggtcgaatgcacaatccaggaaagggtatatcccagtcagccctaccatacaggagatctgtacccacatggctaaa gttaacatctgaagatgtacaggagcagataatgaaattggccaagaaaggccttacaccatctcagattggtgtaattc tgagagattctcatggtgtagcccaggtgagattcgtaacaggaaacaaaatattgaggatccttaagggtaaaggcatg gcccctgatttaccagaggatctataccacctgatcaagaaagccgtcaatatcagaaaacacttggagaggaacagaaa agtttgtattgtgtatttcatgtcatcttgtattgattgtttaaacttctaa |
|
Protein
| Protein ID | pfu_aug1.0_9818.1_53428.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9818.1_53428.t1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEDVQEQIMKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKGKGM APDLPEDLYHLIKKAVNIRKHLERNRKVCIVYFMSSCIDCLNF |
|