Gene
| Gene Model ID | pfu_aug1.0_9828.1_24634 |
|---|---|
| Locus | scaffold9828.1 : 3176 ... 16839 : + |
| To GenomeBrowser | scaffold9828.1:3176..16839 |
| Genes list of scaffold | scaffold9828.1 |
| Synonym | pfu_aug2.0_19.1_30001 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9828.1_24634.t1 | 1 | 1 | eRF1_1 | 13 | 144 | 1.6e-28 | 98.9 | 5.4e-32 | 2.7e-28 | 98.1 |
| pfu_aug1.0_9828.1_24634.t1 | 1 | 1 | eRF1_2 | 149 | 290 | 3.20001e-41 | 140.7 | 1.82169e-44 | 8.90007e-41 | 139.3 |
| pfu_aug1.0_9828.1_24634.t1 | 1 | 1 | eRF1_3 | 294 | 385 | 8.9e-31 | 106.4 | 1.4e-32 | 7.1e-29 | 100.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9828.1_24634.t1 | gi|193589590|ref|XP_001948380.1| | PREDICTED: eukaryotic peptide chain release factor subunit 1 isoform X2 [Acyrthosiphon pisum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_9828.1_24634.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9828.1_24634.t1 atggctactaacggagacgtcggagagagcagtgcggatagaaatgtagaaatatggaaaatcaaaaagctgataaagag tttggaggcagctcgaggcaatggtaccagcatgatttcactgatcattccacctaaagaccagatttcacgagtagcta agatgttagcagatgaatttggtaccgcttccaacatcaagagcagagtcaatcgtctatctgtacttggagcaatcaca tctgtacagcaaaggctcaaactatacaataaagtgccaccaaatggattggtaatctactgtggtaccatagtcacaga tgaaggcaaagaaaagaaagtgaatatagactttgagccattcaggccgatcaatacgtccctgtatttatgtgataata aatttcacacagaggctttaacggccctcttggcagacgataataagtttggttttattgtgatggacggtaacggagcg ttatttggtacactgtcaggaaatacacgagaagttctccacaaattcacagtagatttacccaaaaaaacacggtacat caactattataattatccttcatggagaggaggtcagtcagctttacgttttgcccgattacgtatggagaaacgtcaca attatgttcgtaaagtagcggaagtcgcagtacaacttttcatcaccaacgacaaaccaaacatagctggtctcgtccta gcaggatctgccgatttcaaaacagaacttagccagtctgacatgtttgaccctcgacttcaagccaaaatcatcaaaat agtagacgtgtcgtatggaggagagaacggattcaatcaagccatagaattagccgctgactccttggcaaacgtcaaat tcatacaggaaaagaaattaataggtcgttactttgaagaaatctcacaagacacggggaaatattgctttggcgttgac gatactctaaaagcattagagatgggtgctgtagataccctaattgtatgggaaaaccttgatatcactagatatgtatt aaagaatcacacaacggaaggagcaacgttagaaatcataacagataaatcccaagagggtgcacaatttgtccgaggct tcggtggtataggaggaattttacgatatcaagtggacttccaggtgttcagtgctaatccggatggatttgatgatgac tacgatctagacgattattga |
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Protein
| Protein ID | pfu_aug1.0_9828.1_24634.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9828.1_24634.t1 MATNGDVGESSADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAIT SVQQRLKLYNKVPPNGLVIYCGTIVTDEGKEKKVNIDFEPFRPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGA LFGTLSGNTREVLHKFTVDLPKKTRYINYYNYPSWRGGQSALRFARLRMEKRHNYVRKVAEVAVQLFITNDKPNIAGLVL AGSADFKTELSQSDMFDPRLQAKIIKIVDVSYGGENGFNQAIELAADSLANVKFIQEKKLIGRYFEEISQDTGKYCFGVD DTLKALEMGAVDTLIVWENLDITRYVLKNHTTEGATLEIITDKSQEGAQFVRGFGGIGGILRYQVDFQVFSANPDGFDDD YDLDDY |
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